View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945-Insertion-3 (Length: 408)
Name: NF4945-Insertion-3
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 163 - 408
Target Start/End: Complemental strand, 26900746 - 26900501
Alignment:
| Q |
163 |
aaaaaagtgcacataaatttcaaattgattgtgaacgcactaagttttaggtttgattcacctccgctggtttatgtcaaccgactgcaaaagggtgtac |
262 |
Q |
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| T |
26900746 |
aaaaaagtgcacataaatttcaaattgtgtgtgaacacactaagttttaggtttgattcatctccaccggtttatgtcaaccaaatacaaaagggtgtac |
26900647 |
T |
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| Q |
263 |
atgtgaacctctttcaagatactttggaatccttgacgtgacttgcacatttatatcaagcgtatcatcaattaaatgcaagtagtttataaaataaaat |
362 |
Q |
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| T |
26900646 |
atgcgaacctctttcaagatacttcggaatccttgacttgacttgcacatttataacaagcgtatcatcaattaaatgcaagtagtttataaaataaaat |
26900547 |
T |
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| Q |
363 |
tttgtcagtttccctcgtgaactaaagaaaagaaagactaatttag |
408 |
Q |
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| T |
26900546 |
tttgtcagtttccctcgtgaactaaagaaaagaaagactaatttag |
26900501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 26900826 - 26900747
Alignment:
| Q |
7 |
aaaatattcatattagtgtgcaatacactttcatgaatgttgtggtgtgtcaatttgattctataatgtcttgttaatagt |
87 |
Q |
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| T |
26900826 |
aaaatattcatattagtgtgcaatacactttcatgaatgttgtggtg-gtcaatttgattctataatgtcttgttaatagt |
26900747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 9080494 - 9080588
Alignment:
| Q |
126 |
aaaacttga-caagaagaagatgaaaataaacatgatgaaaaaagtgcacataaatttcaaattgattgtgaacgcactaagttttaggtttgattc |
221 |
Q |
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| T |
9080494 |
aaaacttgaacaagaagaagatgaaaatgaacatgat--aaaaagggcacataaattttaaagagtgtgtgaacacactaagctttaagttcgattc |
9080588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 44729199 - 44729151
Alignment:
| Q |
280 |
gatactttggaatccttgacgtgacttgcacatttatatcaagcgtatc |
328 |
Q |
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| T |
44729199 |
gatacattggaatccttgacgtgacttgcacattcataccaagcgtatc |
44729151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 49061439 - 49061375
Alignment:
| Q |
344 |
gtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttag |
408 |
Q |
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| T |
49061439 |
gtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttag |
49061375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 31286059 - 31286006
Alignment:
| Q |
275 |
ttcaagatactttggaatccttgacgtgacttgcacatttatatcaagcgtatc |
328 |
Q |
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| T |
31286059 |
ttcaggatactttggaatcattgccgtgacttgaacattcatatcaagcttatc |
31286006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 52653888 - 52653847
Alignment:
| Q |
287 |
tggaatccttgacgtgacttgcacatttatatcaagcgtatc |
328 |
Q |
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| T |
52653888 |
tggaatccttgacgtgacttgcacattcacatcaagtgtatc |
52653847 |
T |
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