View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945-Insertion-4 (Length: 381)

Name: NF4945-Insertion-4
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945-Insertion-4
NF4945-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-381)||(11757872-11758245)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 11758245 - 11757872
Alignment:
Q  8 cgatgctctgttaacggaaacaacatcgtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11758245 cgatgctctgttaacggaaacaacatcgtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattc 11758146  T
Q  108 tcagcaaaagtaagttccgatttcgtacaaacttctgaaacttcatcgttctcctttccattttcaaacttcaaaatcaagtttctacgaactccagaac 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11758145 tcagcaaaagtaagttccgatttcgtacaaacttcagaaacttcatcgttctcttttccattttcaaacttcaaaatcaagtttctacgaactccagaac 11758046  T
Q  208 tagaatccacacacgaagtctccgaaacttcaacttcattctcactcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11758045 tagaatccacacacgaagtctccgaaacttcaacttcattctcattcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcga 11757946  T
Q  308 gttcgttcttcctttaacagcagagattctactcgaatcacacgaaacttcacctccggcgaaatccgaaccag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11757945 gttcgttcttcctttaacagcagagattctactcgaatcacacgaaacttcacctccggcgaaatccgaaccag 11757872  T

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