View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945-Insertion-5 (Length: 178)
Name: NF4945-Insertion-5
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 13448603 - 13448774
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448603 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
13448702 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13448703 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccc |
13448774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 13440440 - 13440611
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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| T |
13440440 |
acaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtaca |
13440539 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc |
178 |
Q |
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|||| ||||||||| ||||||| ||||||||||||| || ||||||| ||| || ||||||| ||||||| |
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| T |
13440540 |
acaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccc |
13440611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 13455074 - 13455226
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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| T |
13455074 |
acaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgtaca |
13455173 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattc |
159 |
Q |
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| T |
13455174 |
atactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattc |
13455226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 3417466 - 3417295
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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||||||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
3417466 |
acaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtaca |
3417367 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc |
178 |
Q |
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|||||||||||||| | ||| | |||||||| ||||| ||| ||| || || |||||||||| ||||||| |
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| T |
3417366 |
acactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccc |
3417295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 8e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 28385574 - 28385720
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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||||||||||||||||||||||| |||||||||| || ||||| ||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
28385574 |
acaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtaca |
28385673 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgc |
153 |
Q |
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||||||||||||| || ||| | |||||| |||||| ||||||| |
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| T |
28385674 |
caactgagttaactcgctgtgatttgagccagttcaggcactcgtgc |
28385720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 12540925 - 12541096
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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||||||||||||||||||||||| | |||||| |||||||| ||||| ||||||||||| ||| | |||| || |||||||||||||||||||||| |
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| T |
12540925 |
acaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtaca |
12541024 |
T |
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| Q |
107 |
acactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc |
178 |
Q |
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||||||||||||| || ||| | |||||| || ||| ||||||| | ||||||||||||||||||||| |
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| T |
12541025 |
ccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccc |
12541096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 6447 - 6337
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
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|
||||||||||||||| |||||| |||||||||||| ||||||| |||||||| ||||||||||| | ||| | | ||||||||| |||||||||| |
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| T |
6447 |
acaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtaca |
6348 |
T |
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| Q |
107 |
acactgagtta |
117 |
Q |
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||||||||||| |
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| T |
6347 |
acactgagtta |
6337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 48958387 - 48958497
Alignment:
| Q |
7 |
acaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtaca |
106 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||| |||| || ||||| || |||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
48958387 |
acaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtaca |
48958486 |
T |
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| Q |
107 |
acactgagtta |
117 |
Q |
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||||||||||| |
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| T |
48958487 |
acactgagtta |
48958497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 12641372 - 12641285
Alignment:
| Q |
52 |
atctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaac |
139 |
Q |
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|||||||| |||||||||||||| ||||| |||||| |||||||||||||| |||||||| ||| || || ||||| |||||||| |
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| T |
12641372 |
atctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagccaac |
12641285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 12590103 - 12589934
Alignment:
| Q |
9 |
aacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaac |
108 |
Q |
| |
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|||||||| |||| ||| || ||||||||||| |||| | ||||| || ||||||||||| || |||||| ||||| ||||| |||||||||||| |
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| T |
12590103 |
aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac |
12590004 |
T |
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| Q |
109 |
actgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc |
178 |
Q |
| |
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|| |||||| ||| || || | ||||||||||| | ||| ||||| ||| || ||| ||||||||||| |
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| T |
12590003 |
acagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccc |
12589934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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