View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945-Insertion-6 (Length: 377)
Name: NF4945-Insertion-6
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 144 - 377
Target Start/End: Original strand, 28494190 - 28494422
Alignment:
| Q |
144 |
agaactgaaaatttaagggagacacaaacttgaagtaataccaaaaagatgctaaatgagctaaaatttcattctaaaagctacttcaaaggaagagggt |
243 |
Q |
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| T |
28494190 |
agaactgaaaatttaagggagacacaaacttgaagtaataccaaaaagatgctaaatgagctaaaatttaattctaaaagcta-ttcaaaggaagagggt |
28494288 |
T |
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| Q |
244 |
gcctaaacatgtttatataccaaaaaacacaagaatttgaacaatgtgaacttcaaacaaattctaagcaactttaacattcatcctcagttcctcacgc |
343 |
Q |
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| T |
28494289 |
gcctaaacatgtttatataccaaaaaacacaagaatttgaacaatgtgaacttcaaacaaattctaagcaactttaacattcatcctctgttcctcacgc |
28494388 |
T |
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| Q |
344 |
ctagcctatagatcctaggtcaacttcccacatg |
377 |
Q |
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| T |
28494389 |
ctagcctatagatcctaggtcaacttcccacatg |
28494422 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 28494053 - 28494115
Alignment:
| Q |
8 |
agctttgcattttatatttttgtaataataataataaatgaaaaatattatattctaaagcac |
70 |
Q |
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| T |
28494053 |
agctttgcattttatatttttgtaataataataataaatgaaaaatattatattctaaagcac |
28494115 |
T |
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