View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945-Insertion-7 (Length: 265)

Name: NF4945-Insertion-7
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945-Insertion-7
NF4945-Insertion-7
[»] chr8 (7 HSPs)
chr8 (8-205)||(32663975-32664170)
chr8 (8-198)||(9083006-9083194)
chr8 (98-197)||(28841606-28841703)
chr8 (95-185)||(32207858-32207949)
chr8 (126-199)||(11428314-11428386)
chr8 (149-185)||(14597427-14597463)
chr8 (124-183)||(20171845-20171905)
[»] chr2 (11 HSPs)
chr2 (8-198)||(6414210-6414398)
chr2 (98-198)||(40653624-40653722)
chr2 (98-199)||(22989977-22990076)
chr2 (95-199)||(37777736-37777839)
chr2 (98-199)||(37904043-37904142)
chr2 (95-199)||(3245039-3245142)
chr2 (149-185)||(29752929-29752965)
chr2 (95-185)||(22989116-22989207)
chr2 (132-185)||(31618560-31618613)
chr2 (149-185)||(7574261-7574297)
chr2 (149-185)||(16668856-16668892)
[»] chr3 (9 HSPs)
chr3 (13-198)||(26297545-26297728)
chr3 (98-199)||(3744419-3744518)
chr3 (97-205)||(10179330-10179436)
chr3 (150-205)||(346604-346657)
chr3 (95-142)||(50516065-50516112)
chr3 (150-179)||(3738554-3738583)
chr3 (98-139)||(43267880-43267921)
chr3 (149-185)||(10176644-10176680)
chr3 (149-185)||(52349662-52349698)
[»] chr4 (7 HSPs)
chr4 (98-185)||(34738938-34739025)
chr4 (99-175)||(26577030-26577106)
chr4 (149-185)||(27256666-27256702)
chr4 (149-185)||(46092238-46092274)
chr4 (149-185)||(46134763-46134799)
chr4 (149-185)||(2505171-2505207)
chr4 (130-205)||(34737999-34738072)
[»] chr1 (4 HSPs)
chr1 (98-199)||(39621648-39621747)
chr1 (152-204)||(29679046-29679096)
chr1 (96-205)||(42332490-42332599)
chr1 (149-185)||(13786165-13786201)
[»] chr7 (7 HSPs)
chr7 (98-197)||(17026574-17026671)
chr7 (98-199)||(39073268-39073367)
chr7 (149-185)||(47140381-47140417)
chr7 (149-185)||(5768235-5768271)
chr7 (149-185)||(39067040-39067076)
chr7 (149-185)||(25419745-25419781)
chr7 (124-183)||(44393555-44393615)
[»] scaffold0061 (2 HSPs)
scaffold0061 (98-185)||(46334-46420)
scaffold0061 (149-185)||(54091-54127)
[»] scaffold0017 (2 HSPs)
scaffold0017 (98-185)||(152367-152453)
scaffold0017 (149-185)||(144507-144543)
[»] chr6 (4 HSPs)
chr6 (98-185)||(18880852-18880939)
chr6 (97-199)||(16853426-16853526)
chr6 (95-127)||(8643526-8643558)
chr6 (149-185)||(13433623-13433659)
[»] chr5 (3 HSPs)
chr5 (149-185)||(36990978-36991014)
chr5 (149-199)||(10180441-10180489)
chr5 (130-199)||(37302188-37302255)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 32664170 - 32663975
Alignment:
Q  8 agatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagctttaacaaaattgagtccttagaaaaaagagag 107  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||    
T  32664170 agataataattagaacggtggagctggtaggaatatgtatcaatccaacaaattgtaactgattagctttaacaaaattgagtgcttggaaaagagagag 32664071  T
Q  108 ccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtatattgagat 205  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  32664070 ccacatgatgaatgcttagaaaattagttagaaagggaaaaattggtgaggtgacacataagcaaagtgtagtttag--aatacatgtatattgagat 32663975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 9083006 - 9083194
Alignment:
Q  8 agatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagctttaacaaaattgagtccttagaaaaaagagag 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||| ||||||    
T  9083006 agataataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagttttaacacaattgactgcttagaaaagagagag 9083105  T
Q  108 ccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtata 198  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  9083106 ccacgtggtgaatgcttagaaaattagttaaaaagaaaaaaattagtgaggtgacacataagcaaagtgtagtttag--aatacatgtata 9083194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 28841703 - 28841606
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||    |||||||||||||||||||||||||||| ||| ||||  |||||||||||    
T  28841703 aaaaagagagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtatagcttag--aatacatgtat 28841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 32207949 - 32207858
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgct--taaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||||    ||||||||||||||||  |||||||||||||| |||||    
T  32207949 agaaaagagagagccacatggtgaatgcttataaaaaattagttagaaagg-gggaattggtgaggtgacatgtaagcaaagtgtaggttaga 32207858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 11428314 - 11428386
Alignment:
Q  126 aaaaattagttagaaa-ggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtatat 199  Q
    |||||||||||| ||| || ||| ||| ||||||||||||||||||||| ||||| ||||  |||||||||||||    
T  11428314 aaaaattagttacaaaagggaaatattagtgaggtgacacataagcaaaatgtagcttag--aatacatgtatat 11428386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 14597427 - 14597463
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  14597427 attggtgaggtgacacataagtaaagtgtagcttaga 14597463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 20171905 - 20171845
Alignment:
Q  124 taaaaaattagttagaaag-gaaaaaattggtgaggtgacacataagcaaagtgtagttta 183  Q
    |||||||||||||| |||  ||||| ||| |||| |||||||||||||||| |||||||||    
T  20171905 taaaaaattagttacaaaaagaaaatattagtgaagtgacacataagcaaaatgtagttta 20171845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 6414210 - 6414398
Alignment:
Q  8 agatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagctttaacaaaattgagtccttagaaaaaagagag 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||| ||||||    
T  6414210 agataataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagttttaacacaattgactgcttagaaaagagagag 6414309  T
Q  108 ccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtata 198  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  6414310 ccacgtggtgaatgcttagaaaattagttaaaaagaaaaaaattagtgaggtgacacataagcaaagtgtagtttag--aatacatgtata 6414398  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 40653624 - 40653722
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||||||| |||||||||||||||||  ||||  |||||||||||    
T  40653624 aaaaagagagccacatggtgaatgcttagaaaattagttagataggggaaaattggtgaggtggcacataagcaaagtgtaacttag--aatacatgtat 40653721  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 22989977 - 22990076
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||    |||||||||||||||||||||||||| ||||  ||||  |||||||||||    
T  22989977 aaaaagaaagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaaatgtacgttag--aatacatgtat 22990074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 37777839 - 37777736
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgct--taaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataataca 192  Q
    |||||| ||||||||||||||||||||||  || |||||||||||||||||    ||||||||||||||||  |||||||||||||| ||||  ||||||    
T  37777839 agaaaagagagagccacatggtgaatgcttatagaaaattagttagaaagg-gggaattggtgaggtgacatgtaagcaaagtgtaggttag--aataca 37777743  T
Q  193 tgtatat 199  Q
    |||||||    
T  37777742 tgtatat 37777736  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 37904043 - 37904142
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||     ||||||||||||||||||| | ||| ||||| ||||  |||||||||||    
T  37904043 aaaaagacagccacatggtgaatgcttagaaaattagttagagaggggggcattggtgaggtgacacataggaaaaatgtagcttag--aatacatgtat 37904140  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 3245142 - 3245039
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgcttaa--aaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataataca 192  Q
    |||||| |||||||||||||||||||||||||  ||||| ||||||||| |   | ||| |||||||||||  |||||||||||||||||||  ||||||    
T  3245142 agaaaagagagagccacatggtgaatgcttaaagaaaataagttagaaaag-ggacatttgtgaggtgacatgtaagcaaagtgtagtttag--aataca 3245046  T
Q  193 tgtatat 199  Q
    |||||||    
T  3245045 tgtatat 3245039  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 29752965 - 29752929
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||||||||||||||||||||||||||    
T  29752965 attggtgaggtgacacataagcaaagtgtagtttaga 29752929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 22989116 - 22989207
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgcttaaa--aaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||| |||||| |||||| |||||||||| |  ||||||||||||||||    ||||||||||||||||  |||||||||||||| |||||    
T  22989116 agaaaagagagagtcacatgctgaatgcttatagaaaattagttagaaagg-gggaattggtgaggtgacatgtaagcaaagtgtaggttaga 22989207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 31618560 - 31618613
Alignment:
Q  132 tagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||   | |||||||||||||||||||| |||||||||| |||||    
T  31618560 tagttagaaagggggatattggtgaggtgacacataaacaaagtgtagcttaga 31618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 7574261 - 7574297
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  7574261 attggtgaggtgacacataagcaaaatgtagcttaga 7574297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 16668856 - 16668892
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  16668856 attggtgaggtgacacataagcaaaatgtagcttaga 16668892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26297545 - 26297728
Alignment:
Q  13 ataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagctttaacaaaattgagtccttagaaaaaagagagccaca 112  Q
    |||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||| | || ||||||    
T  26297545 ataattagaatggtggagctattacgaatatgtatcaatccaataaattgtaactcattagttttaacaaaattgagtgcttataaaagacagcgccaca 26297644  T
Q  113 tggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtata 198  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  26297645 tggtgaatgcttagaaaattagttagaaaggggaaaattggtgaggtaacacataagcaaagtgtagtttag--aatacatgtata 26297728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 3744419 - 3744518
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||  | |||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  3744419 aaaaagagagccacatggtgaatgcttagaaaattagttagagaggggagaattggtgaggtgacacataagcaaagtgtaggttag--aatacatgtat 3744516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 10179330 - 10179436
Alignment:
Q  97 aaaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgta 196  Q
    |||| ||| |||||| ||||||||||||| ||||||||||||||| |     ||||||| |||||||  |||||||||||||||||||  ||||||||||    
T  10179330 aaaagagaaagccacttggtgaatgcttagaaaattagttagaaaagggggcattggtgtggtgacatgtaagcaaagtgtagtttag--aatacatgta 10179427  T
Q  197 tattgagat 205  Q
    ||| |||||    
T  10179428 tatagagat 10179436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 346657 - 346604
Alignment:
Q  150 ttggtgaggtgacacataagcaaagtgtagtttagataatacatgtatattgagat 205  Q
    |||||||| ||||||||||||||| ||||||||||  ||||||||||||| |||||    
T  346657 ttggtgagatgacacataagcaaaatgtagtttag--aatacatgtatatagagat 346604  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 50516065 - 50516112
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgcttaaaaaattagttagaaag 142  Q
    |||||| |||||||||||||||||| | ||| ||||||||||||||||    
T  50516065 agaaaagagagagccacatggtgaaagtttagaaaattagttagaaag 50516112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 3738554 - 3738583
Alignment:
Q  150 ttggtgaggtgacacataagcaaagtgtag 179  Q
    ||||||||||||||||||||||||||||||    
T  3738554 ttggtgaggtgacacataagcaaagtgtag 3738583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 43267880 - 43267921
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttaga 139  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  43267880 aaaaagagaaccacatgatgaatgcttagaaaattagttaga 43267921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 10176644 - 10176680
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||| |||||||||||||| |||||||||||||||    
T  10176644 attggttaggtgacacataagtaaagtgtagtttaga 10176680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 52349698 - 52349662
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  52349698 attggtgaggtgacacataagcaaaatgtagcttaga 52349662  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 34738938 - 34739025
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  34738938 aaaaagagagccacgtggtgaatgcttagaaaattagttagaaaggagaaaattggtgaggtgacacataaacaaagtgtagcttaga 34739025  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 26577030 - 26577106
Alignment:
Q  99 aaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagt 175  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||    ||||||||| |||||  ||||||||||    
T  26577030 aaaagagagccacatggtgaacgattagaaaattagttagaaaggagggcattggtgagttgacatgtaagcaaagt 26577106  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 27256702 - 27256666
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27256702 attggtgaggtgacacataagtaaagtgtagtttaga 27256666  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 46092274 - 46092238
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46092274 attggtgaggtgacacataagcaaagtgtagcttaga 46092238  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 46134799 - 46134763
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46134799 attggtgaggtgacacataagcaaagtgtagcttaga 46134763  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 2505171 - 2505207
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  2505171 attggtgaggtgacacataagcaaaatgtagcttaga 2505207  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 34737999 - 34738072
Alignment:
Q  130 attagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtatattgagat 205  Q
    |||||||||||||| |   |||||| |||||||||||| ||||| ||||| ||||  ||||||||||||| |||||    
T  34737999 attagttagaaagggaggcattggtaaggtgacacatatgcaaaatgtaggttag--aatacatgtatatagagat 34738072  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 39621747 - 39621648
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  39621747 aaaaagagagccacatggagaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgtagtttag--aatacatgtat 39621650  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 29679096 - 29679046
Alignment:
Q  152 ggtgaggtgacacataagcaaagtgtagtttagataatacatgtatattgaga 204  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  29679096 ggtgaggtgacacataagcaaagtgtagtttag--aatacatgtatatagaga 29679046  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 42332599 - 42332490
Alignment:
Q  96 gaaaaaagagagccacatggtgaatgct--taaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacat 193  Q
    ||||| ||||||||||||||||||||||  || ||||||||||||||||      |||||||||||| ||  ||| |||||||||||||  |||||||||    
T  42332599 gaaaagagagagccacatggtgaatgcttatagaaaattagttagaaagaggggtattggtgaggtgtcatgtaaccaaagtgtagttt--ataatacat 42332502  T
Q  194 gtatattgagat 205  Q
    |||||| |||||    
T  42332501 gtatatagagat 42332490  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 13786201 - 13786165
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  13786201 attggtgaggtgacacataagcaaaatgtagcttaga 13786165  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 17026671 - 17026574
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  17026671 aaaaagagagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgtagcttag--aatacatgtat 17026574  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 39073268 - 39073367
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtat 197  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  39073268 aaaaagatagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgtaggttag--aatacatgtat 39073365  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 47140417 - 47140381
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||||||||||||||||||||||||||    
T  47140417 attggtgaggtgacacataagcaaagtgtagtttaga 47140381  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 5768235 - 5768271
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  5768235 attggtgaggtgacacataagcaaagtgtagcttaga 5768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 39067040 - 39067076
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39067040 attggtgaggtgacacataagcaaagtgtagcttaga 39067076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 25419745 - 25419781
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  25419745 attggtgaggtgacacataagcaaaatgtagcttaga 25419781  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 44393615 - 44393555
Alignment:
Q  124 taaaaaattagttagaaag-gaaaaaattggtgaggtgacacataagcaaagtgtagttta 183  Q
    |||||||||||||| |||  ||||| ||| |||| |||||||||||||||| |||||||||    
T  44393615 taaaaaattagttacaaaaagaaaatattagtgaagtgacacataagcaaaatgtagttta 44393555  T

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Target: scaffold0061 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 46334 - 46420
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||   ||||||||||||||||||||||| ||||||||| |||||    
T  46334 aaaaagagagccacgtggtgaatgcttagaaaattagttagaaagg-ggaaattggtgaggtgacacataagtaaagtgtagcttaga 46420  T

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Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 54127 - 54091
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||| ||||||||||||||||||||||||||||||    
T  54127 attggttaggtgacacataagcaaagtgtagtttaga 54091  T

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Target: scaffold0017 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 152453 - 152367
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||   ||||||||||||||||||||||| ||||||||| |||||    
T  152453 aaaaagagagccacgtggtgaatgcttagaaaattagttagaaagg-ggaaattggtgaggtgacacataagtaaagtgtagcttaga 152367  T

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Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 144507 - 144543
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||| ||||||||||||||||||||||||||||||    
T  144507 attggttaggtgacacataagcaaagtgtagtttaga 144543  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 18880939 - 18880852
Alignment:
Q  98 aaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||| |||||    
T  18880939 aaaaagagagccacatggagaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgtagcttaga 18880852  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 16853526 - 16853426
Alignment:
Q  97 aaaaaagagagccacatggtgaatgcttaaaaaattagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgta 196  Q
    |||| ||| |||||| ||||||||||||| |||||||||||||||    |  ||||||| |||||||  |||||||||||||||||||  ||||||||||    
T  16853526 aaaagagaaagccacttggtgaatgcttagaaaattagttagaaaatggagcattggtgtggtgacatgtaagcaaagtgtagtttag--aatacatgta 16853429  T
Q  197 tat 199  Q
    |||    
T  16853428 tat 16853426  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 8643526 - 8643558
Alignment:
Q  95 agaaaaaagagagccacatggtgaatgcttaaa 127  Q
    |||||| ||||||||||||||||||||||||||    
T  8643526 agaaaagagagagccacatggtgaatgcttaaa 8643558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 13433623 - 13433659
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  13433623 attggtgaggtgacacataagcaaaatgtagcttaga 13433659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 36991014 - 36990978
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttaga 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36991014 attggtgaggtgacacataagcaaagtgtagcttaga 36990978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 10180489 - 10180441
Alignment:
Q  149 attggtgaggtgacacataagcaaagtgtagtttagataatacatgtatat 199  Q
    ||||||||||||||||||||||||| ||||| ||||  |||||||||||||    
T  10180489 attggtgaggtgacacataagcaaaatgtaggttag--aatacatgtatat 10180441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 37302188 - 37302255
Alignment:
Q  130 attagttagaaaggaaaaaattggtgaggtgacacataagcaaagtgtagtttagataatacatgtatat 199  Q
    ||||||||||||||||   |||||| |||||||||||| ||||| ||||| ||||  |||||||||||||    
T  37302188 attagttagaaaggaagtcattggtaaggtgacacatatgcaaaatgtaggttag--aatacatgtatat 37302255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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