View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945_high_1 (Length: 615)

Name: NF4945_high_1
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945_high_1
NF4945_high_1
[»] chr1 (27 HSPs)
chr1 (179-597)||(3717957-3718371)
chr1 (76-149)||(3717879-3717952)
chr1 (8-78)||(49660176-49660246)
chr1 (8-78)||(11037180-11037248)
chr1 (8-78)||(43560201-43560271)
chr1 (23-72)||(39712381-39712430)
chr1 (8-76)||(21433405-21433473)
chr1 (24-76)||(33070601-33070653)
chr1 (8-77)||(9566965-9567034)
chr1 (8-76)||(11947794-11947862)
chr1 (8-76)||(37516523-37516591)
chr1 (8-79)||(34254355-34254426)
chr1 (9-76)||(48983673-48983740)
chr1 (18-75)||(19947755-19947812)
chr1 (564-597)||(23533061-23533094)
chr1 (565-598)||(28216005-28216038)
chr1 (568-597)||(31730522-31730551)
chr1 (8-77)||(44519156-44519224)
chr1 (42-75)||(50239191-50239224)
chr1 (8-76)||(4213071-4213139)
chr1 (8-76)||(10890050-10890118)
chr1 (8-76)||(15705066-15705134)
chr1 (8-76)||(37619543-37619610)
chr1 (565-597)||(46510470-46510502)
chr1 (565-597)||(46510693-46510725)
chr1 (8-76)||(48858822-48858890)
chr1 (8-76)||(52362481-52362549)
[»] chr3 (22 HSPs)
chr3 (8-77)||(48152290-48152359)
chr3 (20-75)||(536292-536347)
chr3 (8-72)||(29030811-29030875)
chr3 (8-77)||(41670586-41670655)
chr3 (8-76)||(21196123-21196191)
chr3 (8-78)||(10811132-10811202)
chr3 (565-598)||(32417199-32417232)
chr3 (565-597)||(37172021-37172053)
chr3 (8-76)||(48405409-48405477)
chr3 (42-77)||(23770769-23770804)
chr3 (20-71)||(45693750-45693801)
chr3 (9-75)||(29573361-29573427)
chr3 (42-76)||(37035552-37035586)
chr3 (15-76)||(32362932-32362993)
chr3 (8-76)||(16479631-16479698)
chr3 (565-597)||(24175756-24175788)
chr3 (565-597)||(28880407-28880439)
chr3 (8-76)||(37894247-37894315)
chr3 (565-597)||(38944918-38944950)
chr3 (565-597)||(45394163-45394195)
chr3 (8-76)||(49196695-49196762)
chr3 (8-76)||(50559216-50559284)
[»] chr4 (27 HSPs)
chr4 (8-76)||(24509392-24509460)
chr4 (20-76)||(21025600-21025656)
chr4 (8-74)||(26909375-26909441)
chr4 (9-74)||(2401611-2401676)
chr4 (8-77)||(10994157-10994225)
chr4 (565-598)||(25712657-25712690)
chr4 (564-597)||(32507960-32507993)
chr4 (9-76)||(51255745-51255812)
chr4 (9-75)||(18568821-18568886)
chr4 (8-80)||(53796657-53796722)
chr4 (565-598)||(10062771-10062804)
chr4 (564-597)||(35804159-35804192)
chr4 (564-597)||(36157250-36157283)
chr4 (565-598)||(44258699-44258732)
chr4 (8-76)||(5249867-5249935)
chr4 (565-597)||(8459596-8459628)
chr4 (8-76)||(11012140-11012207)
chr4 (565-597)||(12886422-12886454)
chr4 (565-597)||(26629244-26629276)
chr4 (565-597)||(26629433-26629465)
chr4 (565-597)||(33181510-33181542)
chr4 (565-597)||(33230449-33230481)
chr4 (565-597)||(34321014-34321046)
chr4 (566-598)||(37133468-37133500)
chr4 (8-76)||(54669587-54669655)
chr4 (9-77)||(55268007-55268074)
chr4 (8-76)||(55609170-55609237)
[»] scaffold0416 (1 HSPs)
scaffold0416 (8-72)||(6861-6925)
[»] chr7 (23 HSPs)
chr7 (8-76)||(17945067-17945134)
chr7 (8-76)||(35600670-35600738)
chr7 (8-76)||(36703876-36703944)
chr7 (8-76)||(45815260-45815328)
chr7 (8-67)||(33776367-33776426)
chr7 (20-75)||(38656535-38656590)
chr7 (9-79)||(37899319-37899389)
chr7 (9-79)||(37899218-37899288)
chr7 (565-597)||(33258528-33258560)
chr7 (565-597)||(41506567-41506599)
chr7 (8-76)||(47448825-47448893)
chr7 (9-76)||(12007191-12007258)
chr7 (8-75)||(41430156-41430223)
chr7 (8-78)||(13152590-13152659)
chr7 (8-77)||(19426578-19426646)
chr7 (41-74)||(22816951-22816984)
chr7 (566-598)||(7882930-7882962)
chr7 (565-597)||(25513612-25513644)
chr7 (565-597)||(27689320-27689352)
chr7 (565-597)||(40081912-40081944)
chr7 (565-597)||(40659582-40659614)
chr7 (565-597)||(41492333-41492365)
chr7 (565-597)||(43072864-43072896)
[»] chr6 (9 HSPs)
chr6 (8-75)||(10335550-10335617)
chr6 (16-72)||(10826504-10826560)
chr6 (562-597)||(6366693-6366728)
chr6 (8-75)||(6531187-6531254)
chr6 (8-79)||(20822872-20822943)
chr6 (8-77)||(9954546-9954614)
chr6 (8-76)||(17551383-17551451)
chr6 (8-76)||(25127837-25127905)
chr6 (565-597)||(34556612-34556644)
[»] chr2 (18 HSPs)
chr2 (8-75)||(10833650-10833717)
chr2 (20-76)||(13711383-13711439)
chr2 (20-75)||(9048418-9048473)
chr2 (8-80)||(2308327-2308398)
chr2 (565-597)||(24861926-24861958)
chr2 (565-597)||(25272940-25272972)
chr2 (8-76)||(40443046-40443114)
chr2 (565-597)||(43927793-43927825)
chr2 (8-75)||(8293229-8293296)
chr2 (14-76)||(31296856-31296917)
chr2 (9-75)||(34134776-34134842)
chr2 (8-78)||(43057061-43057131)
chr2 (568-597)||(11687964-11687993)
chr2 (565-598)||(12262735-12262768)
chr2 (564-597)||(19029969-19030002)
chr2 (8-72)||(2563707-2563771)
chr2 (8-76)||(36132973-36133040)
chr2 (8-76)||(40504223-40504291)
[»] chr8 (16 HSPs)
chr8 (20-68)||(39692302-39692350)
chr8 (8-76)||(2621784-2621852)
chr8 (9-79)||(3946236-3946306)
chr8 (8-76)||(4658267-4658335)
chr8 (565-597)||(28237287-28237319)
chr8 (8-75)||(25987791-25987858)
chr8 (564-597)||(5831550-5831583)
chr8 (565-597)||(290613-290645)
chr8 (565-597)||(4718231-4718263)
chr8 (566-598)||(7302682-7302714)
chr8 (565-597)||(17075317-17075349)
chr8 (565-597)||(17572921-17572953)
chr8 (565-597)||(30652651-30652683)
chr8 (8-76)||(33100473-33100541)
chr8 (8-72)||(33279553-33279617)
chr8 (8-76)||(43285967-43286035)
[»] chr5 (11 HSPs)
chr5 (8-75)||(9742384-9742451)
chr5 (9-78)||(18695315-18695384)
chr5 (565-597)||(2824295-2824327)
chr5 (9-77)||(8920076-8920144)
chr5 (9-75)||(21922150-21922216)
chr5 (8-77)||(30640788-30640857)
chr5 (552-597)||(38566693-38566737)
chr5 (8-76)||(1274357-1274424)
chr5 (8-76)||(13089786-13089854)
chr5 (565-597)||(20224951-20224983)
chr5 (8-76)||(35075580-35075648)
[»] scaffold0012 (1 HSPs)
scaffold0012 (563-598)||(47594-47629)
[»] scaffold0432 (1 HSPs)
scaffold0432 (8-77)||(6524-6593)
[»] scaffold0085 (1 HSPs)
scaffold0085 (8-72)||(22858-22922)
[»] scaffold0076 (1 HSPs)
scaffold0076 (565-597)||(16296-16328)
[»] scaffold0034 (1 HSPs)
scaffold0034 (8-76)||(101910-101978)
[»] scaffold0006 (1 HSPs)
scaffold0006 (41-77)||(73081-73117)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 179 - 597
Target Start/End: Original strand, 3717957 - 3718371
Alignment:
Q  179 caacgagccctattattgacaacacattaagtcaatctttaacaatgagataatacaagaacgtagttcctagatctactagtaaactatgagtatcatc 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3717957 caacgagccctattattgacaacacattaagtcaacctttaacaatgagataatacaagaacgtagttcctagatctactagtaa-ctatgagtatcatc 3718055  T
Q  279 aattggagttgtcgagacctaagtacatgtgacatgtcacatgtgcacaatttctaccctaattgctagtttagtgtcacaaatctatgaattttattaa 378  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3718056 aattggaattgtcgagacctaagtacatgtgacatgtcacatgtgcacaatttctaccctaattgctagtttagtgtcacaaatctatgaattttattaa 3718155  T
Q  379 aattgtcaannnnnnnaataaagttgttagatgtgtaaaagaagcttcattttggatagaattatagaaaggtggggtgtaacttttttcggacaaaatt 478  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  3718156 aattgtcaattattttaataaagttgttagatgtgtaaaagaagcttcattttgg--------atagaaaggtggggtgtaacttttttcggacaaaatt 3718247  T
Q  479 ttctcaaacttgaaattcaattttatgcacttagagagagag-----aaaaatagccaattatgtgtacaaaatttcaataattttaaaatgggttaatt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3718248 ttctcaaacttgaaattcaattttatgcacttagagagagagagaaaaaaaatagccaattatgtgtacaaaatttcaataattttaaaatgggttaatt 3718347  T
Q  574 aagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||||    
T  3718348 aagtaaatgatccctataaatatt 3718371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 3717879 - 3717952
Alignment:
Q  76 taatacaatcgcttaatcatgaagatgtgttcaagcaaaatcaacgcaattcatatcaatatttagtcatctat 149  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  3717879 taatacaatcgcttaatcatgaagatgtgttcaaacaaagtcaacgcaattcatatcaatatttagtcatctat 3717952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 49660246 - 49660176
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  49660246 aatgtgagtatgagagataaagttgtcacataggttgtcacaaaatggttgttaaaatatcatttctctaa 49660176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 11037248 - 11037180
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||||||| |||||||||||||||||||||    
T  11037248 aatgtaagtatgagagataaagttatcaca--ggttgtcacaaaatggttgtcaaaatatcatttctctaa 11037180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 43560271 - 43560201
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||| ||||| ||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||    
T  43560271 aatgtgagtatgagagataaagttgtcacctagattgtcacaaaatggttgtgaaaatatcatttctctaa 43560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 39712430 - 39712381
Alignment:
Q  23 gataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    |||||||||||||||||| || |||||||||||| |||||||||||||||    
T  39712430 gataaagttgtcacatagattatcacaaaatggttgtcaaaatatcattt 39712381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 21433405 - 21433473
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||||||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  21433405 aatgtgagtataagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctct 21433473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 33070653 - 33070601
Alignment:
Q  24 ataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  33070653 ataaaattgtcacataagttgtcataaaatggttgtcaaaatatcatttctct 33070601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 9566965 - 9567034
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  ||||||||||||||||    
T  9566965 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 11947862 - 11947794
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  11947862 aatgtcagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctct 11947794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 37516591 - 37516523
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||||||| |||||| |||  |||| |||||||| | |||||||||||||||||||    
T  37516591 aatgtgagtatgagagataaaattgtcatataaattgttacaaaatgattgtcaaaatatcatttctct 37516523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 34254355 - 34254426
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 79  Q
    ||||| ||||| |||||||||||||||||| | ||||||| ||||||   ||  ||||||||||||||||||    
T  34254355 aatgtgagtatgagagataaagttgtcacagaagttgtcataaaatgaatgttcaaatatcatttctctaat 34254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 48983673 - 48983740
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  48983673 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 19947755 - 19947812
Alignment:
Q  18 taagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||||| |||||||||||| | ||||||| |||||||| ||  ||||||||||||||    
T  19947755 taagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 19947812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Complemental strand, 23533094 - 23533061
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||| ||||||||||    
T  23533094 tgggttaattaagtaaatgatccttataaatatt 23533061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 28216038 - 28216005
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||| ||||||||||||||||    
T  28216038 gggttaattaagtaaataatccctataaatattt 28216005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 597
Target Start/End: Original strand, 31730522 - 31730551
Alignment:
Q  568 ttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||||||||||    
T  31730522 ttaattaagtaaatgatccctataaatatt 31730551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 44519156 - 44519224
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||||||||||||||| |||||||||| | | ||||||| |||||||| ||  | ||||||||||||||    
T  44519156 aatgtaagtataagagagaaagttgtcataaaagttgtca-aaaatggttgttcatatatcatttctcta 44519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 50239191 - 50239224
Alignment:
Q  42 ttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||||||||||||| ||||||||||||||||||    
T  50239191 ttgtcacaaaatggttgtcaaaatatcatttctc 50239224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 4213139 - 4213071
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||| ||| |||||||| ||  |||||||||||||||    
T  4213139 aatgtgagtatgagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctct 4213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 10890050 - 10890118
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  10890050 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 10890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 15705066 - 15705134
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  15705066 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 15705134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 37619610 - 37619543
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||| ||| |||||||| ||| |||||||||||||||    
T  37619610 aatgtgagtatgagagagaaagttgtcacaaaagttatca-aaaatggttgtccaaatatcatttctct 37619543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 46510470 - 46510502
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  46510470 gggttaattaagtaaatggtccctataaatatt 46510502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 46510725 - 46510693
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  46510725 gggttaattaagtaaatggtccctataaatatt 46510693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 48858890 - 48858822
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| ||| |||| ||  |||||||||||||||    
T  48858890 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 48858822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 52362549 - 52362481
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  52362549 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 52362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 48152290 - 48152359
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48152290 aatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctcta 48152359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 536292 - 536347
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  536292 agagataaagttgtcacataggttgtcacaaaatggttgtcaaaatatcatttctc 536347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 29030811 - 29030875
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  29030811 aatgtaagtatgagagataaagttgtcacctaggttgtcacaaaatgattgtcaaaatatcattt 29030875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 41670586 - 41670655
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  41670586 aatgtgagtatgagagataaagttgtcacctaggttgtcacaaaatggttgtcatgatatcatttctcta 41670655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 21196191 - 21196123
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||||||  ||  |||||||||||||||    
T  21196191 aatgtaagtatgagagagaaagttgtcacagaagttgtcacaaaatggatgttcaaatatcatttctct 21196123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 10811202 - 10811132
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||||    
T  10811202 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctctaa 10811132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 32417232 - 32417199
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||||||||||||||||||||    
T  32417232 gggttaattaagtaaatgatccctataaatattt 32417199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 37172021 - 37172053
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  37172021 gggttaattaagtaaatgatccctataaatatt 37172053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 48405477 - 48405409
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||| ||| | |||||||||||||||| ||  |||||||||||||||    
T  48405477 aatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 23770769 - 23770804
Alignment:
Q  42 ttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23770769 ttgtcacaaaatggttgtcaaaatatcatttctcta 23770804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 45693801 - 45693750
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatt 71  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||| ||||||||    
T  45693801 agagataaagttgtcacctaaattgtcacaaaatggttgtcaagatatcatt 45693750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29573361 - 29573427
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  ||||||||||||||    
T  29573361 atgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 29573427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 37035552 - 37035586
Alignment:
Q  42 ttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||||||| |||||||||||||||||||    
T  37035552 ttgtcacaaaatggttgtcaaaatatcatttctct 37035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 32362993 - 32362932
Alignment:
Q  15 gtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    |||| |||||||||||||||| | | ||||||| |||||||| ||  |||||||||||||||    
T  32362993 gtatgagagataaagttgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 16479698 - 16479631
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  16479698 aatgtgagtatgagagagaaagttgtcacaaaagttgt-acaaaatggttgtacaaatatcatttctct 16479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 24175788 - 24175756
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||| ||||||||||    
T  24175788 gggttaattaagtaaatgatccatataaatatt 24175756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 28880407 - 28880439
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||||||| |||||    
T  28880407 gggttaattaagtaaatgatccctatagatatt 28880439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 37894247 - 37894315
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  |||||||||||||||    
T  37894247 aatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctct 37894315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 38944918 - 38944950
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||| ||||||||||||||||    
T  38944918 gggttaattaagtaaacgatccctataaatatt 38944950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 45394163 - 45394195
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  45394163 gggttaattaagtaaatggtccctataaatatt 45394195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 49196762 - 49196695
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| ||| |||||||| || ||||||||||||||| ||  |||||||||||||||    
T  49196762 aatgtgagtatgagagagaaaattgtcacaaag-ttgtcacaaaatggttgtacaaatatcatttctct 49196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 50559216 - 50559284
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||| ||||| ||| |||||||| | ||||||| ||||| || ||  |||||||||||||||    
T  50559216 aatgtaagtatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctct 50559284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 24509392 - 24509460
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24509392 aatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctct 24509460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21025656 - 21025600
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  21025656 agagataaagttgtcacataaattgtcacaaaatggttgtcaaaatatcatttctct 21025600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 26909441 - 26909375
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 74  Q
    ||||| ||||| |||||||||||| |||||||| |||||||||||| || |  ||||||||||||||    
T  26909441 aatgtgagtatgagagataaagttctcacatagattgtcacaaaatagttgataaaatatcatttct 26909375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2401676 - 2401611
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 74  Q
    |||| ||||| |||||||||||||||||| | |||||||||||||||  ||  |||||||||||||    
T  2401676 atgtgagtatgagagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttct 2401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 10994157 - 10994225
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| |||||||||||||||| | || ||||||||||||||| ||  ||||||||||||||||    
T  10994157 aatgtgagtatgagagataaagttgtcaaa-agattgtcacaaaatggttgtacaaatatcatttctcta 10994225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 598
Target Start/End: Original strand, 25712657 - 25712690
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||||||||||||||||||||    
T  25712657 gggttaattaagtaaatgatccctataaatattt 25712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 32507960 - 32507993
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||||||||||||||    
T  32507960 tgggttaattaagtaaatgatccctataaatatt 32507993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 51255812 - 51255745
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  51255812 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 18568821 - 18568886
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||| ||||||||||| ||||||||| || | |||||||||||||||| ||  ||||||||||||||    
T  18568821 atgtgagtataagagaaaaagttgtc-caaaagttgtcacaaaatggttgtataaatatcatttctc 18568886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 53796722 - 53796657
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaata 80  Q
    ||||| |||||||||||||||||||||||||| |||||       |||| |||||||||||||||||| ||||    
T  53796722 aatgtgagtataagagataaagttgtcacataagttgt-------tggttgtcaaaatatcatttctcaaata 53796657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 10062804 - 10062771
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    |||||||||||||||||| |||||||||||||||    
T  10062804 gggttaattaagtaaatggtccctataaatattt 10062771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 35804159 - 35804192
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||| ||||||||||||||    
T  35804159 tgggttaattaagtaaatggtccctataaatatt 35804192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 36157250 - 36157283
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||| ||||||||||||||    
T  36157250 tgggttaattaagtaaatggtccctataaatatt 36157283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Original strand, 44258699 - 44258732
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    |||||||||||||||||| |||||||||||||||    
T  44258699 gggttaattaagtaaatggtccctataaatattt 44258732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 5249935 - 5249867
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| |   |||||||||||||||    
T  5249935 aatgtgagtatgagagagaaagttgtcacaaatgttgtcataaaatggttgcacaaatatcatttctct 5249867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 8459628 - 8459596
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  8459628 gggttaattaagtaaatggtccctataaatatt 8459596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 11012207 - 11012140
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||| |||||||||||||| | | | ||||||| |||||||| ||  |||||||||||||||    
T  11012207 aatgtaagtatgagagataaagttgtta-aaaagttgtcataaaatggttgtacaaatatcatttctct 11012140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 12886422 - 12886454
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||| ||||||||||||    
T  12886422 gggttaattaagtaaatgattcctataaatatt 12886454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 26629244 - 26629276
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  26629244 gggttaattaagtaaatggtccctataaatatt 26629276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 26629433 - 26629465
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  26629433 gggttaattaagtaaatggtccctataaatatt 26629465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 33181510 - 33181542
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||| ||||||||||||||||||||||||||||    
T  33181510 gggtcaattaagtaaatgatccctataaatatt 33181542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 33230481 - 33230449
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||| ||||||||||||||||||||||||||||    
T  33230481 gggtcaattaagtaaatgatccctataaatatt 33230449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 34321014 - 34321046
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  34321014 gggttaattaagtaaatggtccctataaatatt 34321046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 598
Target Start/End: Complemental strand, 37133500 - 37133468
Alignment:
Q  566 ggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||| |||||||||||||||    
T  37133500 ggttaattaagtaaatggtccctataaatattt 37133468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 54669587 - 54669655
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||| | |||||||||||||| | | |||||||| ||||||  ||  |||||||||||||||    
T  54669587 aatgtaagtatgaaagataaagttgtcataaaagttgtcaccaaatggatgttgaaatatcatttctct 54669655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 55268007 - 55268074
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    |||| ||||| |||||||||||||| ||| | ||||||||||| |||| ||  ||||||||||||||||    
T  55268007 atgtgagtatgagagataaagttgt-acaaaagttgtcacaaattggttgtacaaatatcatttctcta 55268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 55609170 - 55609237
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  55609170 aatgtgagtatgagagagaaagttgtcacaaaagttgt-acaaaatggttgtacaaatatcatttctct 55609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 6925 - 6861
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  6925 aatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcattt 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 17945134 - 17945067
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17945134 aatgtgagtatgagagataaagttgtcacatag-ttgtcacaaaatggttgtcaaaatatcatttctct 17945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 35600738 - 35600670
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  35600738 aatgtgagtatgaaagataaaattgtcacataggttgtcacaaaatggttgtcaaaatatcatttctct 35600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 36703876 - 36703944
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  36703876 aatgtgagtatgagagataaaattgtcacatatgttgtcacaaaatggttgtcaaaatatcatttctct 36703944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 45815260 - 45815328
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  45815260 aatgtgagtatgagagataaagttgtcacatatattgtcacaaaatggttgtcaaaatatcatttctct 45815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 33776426 - 33776367
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatat 67  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33776426 aatgtgagtatgagagataaagttgtcatataggttgtcacaaaatggttgtcaaaatat 33776367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 38656590 - 38656535
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||    
T  38656590 agagataaagttgtcaaataagttctcacaaaatggttgtcaaaatatcatttctc 38656535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 37899389 - 37899319
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 79  Q
    |||| ||||| |||||||||||||||||| | |||||||||||||||  ||  ||||||||||||||||||    
T  37899389 atgtgagtatgagagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctaat 37899319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37899218 - 37899288
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 79  Q
    |||||||||| ||||| |||||||||||| |  ||||||||||||||  ||  ||||||||||||||||||    
T  37899218 atgtaagtatgagagagaaagttgtcacaaaaattgtcacaaaatggatgttcaaatatcatttctctaat 37899288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 33258560 - 33258528
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  33258560 gggttaattaagtaaatgatccctataaatatt 33258528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 41506599 - 41506567
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  41506599 gggttaattaagtaaatgatccctataaatatt 41506567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 47448893 - 47448825
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  47448893 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 12007191 - 12007258
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  12007191 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 41430156 - 41430223
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||||||||| |||||||||||| | ||||| | |||||||| ||| | ||||||||||||    
T  41430156 aatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtccatatatcatttctc 41430223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 13152659 - 13152590
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||||    
T  13152659 aatgtgagtatgagagagaaagttgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctctaa 13152590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 19426646 - 19426578
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| ||||| |||||||||| | || ||||||||||||||| ||  ||||||||||||||||    
T  19426646 aatgtgagtatgagagagaaagttgtcaaaaag-ttgtcacaaaatggttgtacaaatatcatttctcta 19426578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 22816984 - 22816951
Alignment:
Q  41 gttgtcacaaaatggtagtcaaaatatcatttct 74  Q
    |||||||||||||||| |||||||||||||||||    
T  22816984 gttgtcacaaaatggttgtcaaaatatcatttct 22816951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 598
Target Start/End: Complemental strand, 7882962 - 7882930
Alignment:
Q  566 ggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||| |||||||||||||||    
T  7882962 ggttaattaagtaaatggtccctataaatattt 7882930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 25513644 - 25513612
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  25513644 gggttaattaagtaaatggtccctataaatatt 25513612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 27689320 - 27689352
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  27689320 gggttaattaagtaaatggtccctataaatatt 27689352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 40081944 - 40081912
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  40081944 gggttaattaagtaaatggtccctataaatatt 40081912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 40659582 - 40659614
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||| ||||||||||||||||||||    
T  40659582 gggttaattaaggaaatgatccctataaatatt 40659614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 41492333 - 41492365
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  41492333 gggttaattaagtaaatggtccctataaatatt 41492365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 43072864 - 43072896
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  43072864 gggttaattaagtaaatggtccctataaatatt 43072896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 10335617 - 10335550
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  10335617 aatgtgagtatgagagataaagttgtcacataagtcgtcacaaaatggttgtcaaaatatcatttctc 10335550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 10826560 - 10826504
Alignment:
Q  16 tataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||||| ||||| ||||||| || ||||||||||||||||  ||||||||||||||    
T  10826560 tataagaaataaaattgtcacttaagttgtcacaaaatggttatcaaaatatcattt 10826504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 597
Target Start/End: Complemental strand, 6366728 - 6366693
Alignment:
Q  562 aatgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||| ||||||||||||||    
T  6366728 aatgggttaattaagtaaatggtccctataaatatt 6366693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 6531187 - 6531254
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||| ||||| ||||||||| |||| |||||||||||||||  ||  ||||||||||||||    
T  6531187 aatgtgagtatgagagagaaagttgtcccataagttgtcacaaaatggatgttcaaatatcatttctc 6531254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 20822872 - 20822943
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 79  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  ||||||||||||||||||    
T  20822872 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctctaat 20822943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 9954614 - 9954546
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||||||||| ||||| |||||||||| | || |||||||||| |||| ||  ||||||||||||||||    
T  9954614 aatgtaagtatgagagagaaagttgtcaaaaag-ttgtcacaaattggttgtacaaatatcatttctcta 9954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 17551383 - 17551451
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||| ||| | ||||||| |||||||| ||  |||||||||||||||    
T  17551383 aatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 17551451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 25127837 - 25127905
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| ||  |||||||||||||||    
T  25127837 aatgtgagtatcagagagaaagttttcacaaaagttgttacaaaatggttgtacaaatatcatttctct 25127905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 34556644 - 34556612
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  34556644 gggttaattaagtaaatggtccctataaatatt 34556612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 10833650 - 10833717
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10833650 aatgtgagtatgagagataaaattgtcacatagattgtcacaaaatggttgtcaaaatatcatttctc 10833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 13711383 - 13711439
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  13711383 agagataaagttgtcacgtaggttgtcacaaaatgggtgtcaaaatatcatttctct 13711439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 9048418 - 9048473
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||||||||||||| |||||| || |||||||||||| ||||||||||||||||||    
T  9048418 agagataaagttgttacatagattatcacaaaatggttgtcaaaatatcatttctc 9048473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 2308327 - 2308398
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaata 80  Q
    ||||| ||||| |||||||||||||||| | ||||||||| ||| |||| ||  |||||||||||||||||||    
T  2308327 aatgtgagtatgagagataaagttgtcaaa-aggttgtcaaaaattggttgtacaaatatcatttctctaata 2308398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 24861958 - 24861926
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  24861958 gggttaattaagtaaatgatccctataaatatt 24861926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 25272940 - 25272972
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  25272940 gggttaattaagtaaatgatccctataaatatt 25272972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 40443114 - 40443046
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||||||||||||| ||||||||   ||||||| |||| ||| ||  |||||||||||||||    
T  40443114 aatgtaagtataagagataaatttgtcacagcagttgtcataaaacggttgttcaaatatcatttctct 40443046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 43927825 - 43927793
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  43927825 gggttaattaagtaaatgatccctataaatatt 43927793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 8293296 - 8293229
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||||| | |||||||||| |||||  || ||||||||| || ||||||||||||||||||    
T  8293296 aatgtgagtataaaaaataaagttgttacataaattatcacaaaatagttgtcaaaatatcatttctc 8293229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 31296856 - 31296917
Alignment:
Q  14 agtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| |||||||||||||||| | | |||||||||||||||| ||  |||||||||||||||    
T  31296856 agtatgagagataaagttgtcaaa-acgttgtcacaaaatggttgtacaaatatcatttctct 31296917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 34134776 - 34134842
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||| ||||| ||||| |||||||||| | | ||||| |||||||||| || |||||||||||||||    
T  34134776 atgtcagtatgagagagaaagttgtcagaaaagttgttacaaaatggttgtaaaaatatcatttctc 34134842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 43057131 - 43057061
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    ||||| ||||||||||| |||||||||||| | ||||| | ||| |||| ||  |||||||||||||||||    
T  43057131 aatgtgagtataagagagaaagttgtcacaaaagttgttaaaaagtggttgttcaaatatcatttctctaa 43057061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 597
Target Start/End: Original strand, 11687964 - 11687993
Alignment:
Q  568 ttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||||||||||||    
T  11687964 ttaattaagtaaatgatccctataaatatt 11687993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Original strand, 12262735 - 12262768
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatattt 598  Q
    |||||||||||||||||| |||||||||||||||    
T  12262735 gggttaattaagtaaatggtccctataaatattt 12262768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 19029969 - 19030002
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||| ||||||||||||||    
T  19029969 tgggttaattaagtaaatggtccctataaatatt 19030002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 2563771 - 2563707
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||||||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||    
T  2563771 aatgtaagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 2563707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 36133040 - 36132973
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| |||||||||||||||||| |  |||||||||| |||| ||  |||||||||||||||    
T  36133040 aatgtgagtatgagagataaagttgtcaca-aaattgtcacaaagtggttgtacaaatatcatttctct 36132973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 40504291 - 40504223
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||||||||| ||| ||||||||   ||||||| |||||||| ||  |||||||||||||||    
T  40504291 aatgtgagtataagagagaaatttgtcacaacagttgtcataaaatggttgttcaaatatcatttctct 40504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 39692350 - 39692302
Alignment:
Q  20 agagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatc 68  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39692350 agagataaagttgtcacataggttgtcacaaaatggttgtcaaaatatc 39692302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 2621852 - 2621784
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||| | ||| ||||||| | || ||  |||||||||||||||    
T  2621852 aatgtaagtataagagataaagttgtcacaaaagttatcacaaattagttgtataaatatcatttctct 2621784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 3946306 - 3946236
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 79  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||||||    
T  3946306 atgtgagtatgagagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctaat 3946236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 4658267 - 4658335
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||||||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  4658267 aatgtaagtatgagagaaaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 4658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 28237287 - 28237319
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  28237287 gggttaattaagtaaatgatccctataaatatt 28237319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 25987791 - 25987858
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||| |||||||||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  25987791 aatgtgagtatgagagataaagttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 25987858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Complemental strand, 5831583 - 5831550
Alignment:
Q  564 tgggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||| ||||||||||||||    
T  5831583 tgggttaattaagtaaatggtccctataaatatt 5831550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 290645 - 290613
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  290645 gggttaattaagtaaatggtccctataaatatt 290613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 4718263 - 4718231
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  4718263 gggttaattaagtaaatggtccctataaatatt 4718231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 598
Target Start/End: Complemental strand, 7302714 - 7302682
Alignment:
Q  566 ggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||| |||||||||||||||    
T  7302714 ggttaattaagtaaatgctccctataaatattt 7302682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 17075317 - 17075349
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||| |||||||||||    
T  17075317 gggttaattaagtaaatgatctctataaatatt 17075349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 17572953 - 17572921
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    ||||||||||||||||||||| |||||||||||    
T  17572953 gggttaattaagtaaatgatctctataaatatt 17572921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 30652651 - 30652683
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||| ||||||||||||    
T  30652651 gggttaattaagtaaatgattcctataaatatt 30652683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 33100473 - 33100541
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  |||||||||||||||    
T  33100473 aatgtgagtatgagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcatttctct 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 33279553 - 33279617
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||||||||| |||||||||||||||||| | ||||| |  ||||||| ||  |||||||||||    
T  33279553 aatgtaagtatgagagataaagttgtcacaaaagttgttaagaaatggttgtacaaatatcattt 33279617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 43285967 - 43286035
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||| | | |||||||| ||| |||||||||||||||    
T  43285967 aatgtgagtatgagagagaaagttgtcacaaaagttattagaaaatggttgtccaaatatcatttctct 43286035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 9742384 - 9742451
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    ||||| ||||| |||||| ||||||||| |||  ||||||||||||||| ||||||||||||||||||    
T  9742384 aatgtgagtatgagagatgaagttgtcagataacttgtcacaaaatggttgtcaaaatatcatttctc 9742451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 18695384 - 18695315
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 78  Q
    |||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||||    
T  18695384 atgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctctaa 18695315  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 2824327 - 2824295
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||||||||||||||||||    
T  2824327 gggttaattaagtaaatgatccctataaatatt 2824295  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 8920144 - 8920076
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||||    
T  8920144 atgtgagtatgagagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 8920076  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 21922150 - 21922216
Alignment:
Q  9 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 75  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||    
T  21922150 atgtgagtatgagagagaaagttgtcacaaacgttgtcacaaaatggatgttcaaatatcatttctc 21922216  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 30640857 - 30640788
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||||| ||| ||||| |||||||| ||| | |||||||||||||||  ||  ||||||||||||||||    
T  30640857 aatgtaaatatgagagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 30640788  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 38566737 - 38566693
Alignment:
Q  552 ataattttaaaatgggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||    
T  38566737 ataatttttaaa-gggttaattaagtaaatggtccctataaatatt 38566693  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 1274424 - 1274357
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| | |||||||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  1274424 aatgtgagtatgaaagataaagttgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctct 1274357  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 13089786 - 13089854
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| | ||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  13089786 aatgtgagtatgaaagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 13089854  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 20224983 - 20224951
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  20224983 gggttaattaagtaaatggtccctataaatatt 20224951  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 35075580 - 35075648
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||||  ||||||| |||||| | ||  |||||||||||||||    
T  35075580 aatgtgagtatgagagaaaaagttgtcacatcagttgtcaaaaaatgattgttcaaatatcatttctct 35075648  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 598
Target Start/End: Complemental strand, 47629 - 47594
Alignment:
Q  563 atgggttaattaagtaaatgatccctataaatattt 598  Q
    ||||||||||||||||||||||||||||||||||||    
T  47629 atgggttaattaagtaaatgatccctataaatattt 47594  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 6524 - 6593
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||| ||||| |||||||||||||||||| | ||||| | |||||| | ||  ||||||||||||||||    
T  6524 aatgtgagtatgagagataaagttgtcacaaaagttgttaaaaaatgattgttcaaatatcatttctcta 6593  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 22858 - 22922
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 72  Q
    ||||| ||||||||| |||||||||||| | | |||||||||||||| | ||  |||||||||||    
T  22858 aatgtgagtataagaaataaagttgtcataaaagttgtcacaaaatgattgttcaaatatcattt 22922  T

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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 16296 - 16328
Alignment:
Q  565 gggttaattaagtaaatgatccctataaatatt 597  Q
    |||||||||||||||||| ||||||||||||||    
T  16296 gggttaattaagtaaatggtccctataaatatt 16328  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 101910 - 101978
Alignment:
Q  8 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 76  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  | |||||||||||||    
T  101910 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcagatatcatttctct 101978  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 73081 - 73117
Alignment:
Q  41 gttgtcacaaaatggtagtcaaaatatcatttctcta 77  Q
    ||||||||||||| || ||||||||||||||||||||    
T  73081 gttgtcacaaaatagttgtcaaaatatcatttctcta 73117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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