View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945_high_11 (Length: 289)
Name: NF4945_high_11
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8930743 - 8930499
Alignment:
| Q |
18 |
atcttatcttatcagctacctgactgtatttttaacttgtctggtcactttcatcaaagtttacgcactgccaatttgctatatagggtgatgccctttg |
117 |
Q |
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| T |
8930743 |
atcttatcttatcagctacctgactgtatttttaacttgtctggtcactttcatcaaagtttacgcactgccaatttgctatatagggtgatgccctttg |
8930644 |
T |
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| Q |
118 |
acccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggtattacgtagattcatcaaaattacgatgagccacaacgtgtatc |
217 |
Q |
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| T |
8930643 |
acccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggt---------attcgtcaaaattacgatgagccacaacgtgtatc |
8930553 |
T |
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| Q |
218 |
ttttgtaaacttatggtagctcaccgtaatttcaacaaacccacgatgcattca |
271 |
Q |
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| T |
8930552 |
ttttgtaaaaatatggtagctcaccgtaatttcaacaaacccacgatgcattca |
8930499 |
T |
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