View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945_high_13 (Length: 250)

Name: NF4945_high_13
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945_high_13
NF4945_high_13
[»] chr1 (3 HSPs)
chr1 (7-231)||(28610498-28610722)
chr1 (7-65)||(28610892-28610950)
chr1 (25-107)||(28610394-28610476)
[»] chr5 (2 HSPs)
chr5 (138-231)||(14677176-14677269)
chr5 (13-137)||(14677042-14677166)
[»] chr4 (9 HSPs)
chr4 (28-227)||(35109664-35109863)
chr4 (28-227)||(35109892-35110091)
chr4 (28-227)||(35110120-35110319)
chr4 (28-227)||(35110348-35110547)
chr4 (28-227)||(35110576-35110775)
chr4 (15-227)||(36294465-36294677)
chr4 (15-215)||(36294705-36294905)
chr4 (103-227)||(35109511-35109635)
chr4 (15-81)||(31288321-31288387)
[»] chr8 (7 HSPs)
chr8 (7-227)||(35000008-35000228)
chr8 (13-137)||(36459859-36459983)
chr8 (15-215)||(6168319-6168519)
chr8 (13-137)||(33772938-33773062)
chr8 (138-231)||(36459993-36460086)
chr8 (28-231)||(33774878-33775081)
chr8 (16-68)||(35000701-35000753)
[»] chr7 (1 HSPs)
chr7 (16-230)||(47989757-47989971)
[»] chr6 (2 HSPs)
chr6 (115-227)||(24039450-24039562)
chr6 (139-206)||(24039926-24039993)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 28610722 - 28610498
Alignment:
Q  7 atcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610722 atcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttt 28610623  T
Q  107 tccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28610622 tccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtaatccgcaagagttct 28610523  T
Q  207 accgtcttctagctgttttccggcg 231  Q
    |||||||||||||||||||||||||    
T  28610522 accgtcttctagctgttttccggcg 28610498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 28610950 - 28610892
Alignment:
Q  7 atcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgtt 65  Q
    |||||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||    
T  28610950 atcaatcgctgctgatccggtggaatgccctccttatcctgaatcttggccttcacgtt 28610892  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 28610476 - 28610394
Alignment:
Q  25 ggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggtttt 107  Q
    |||||||| ||||| |||||||| || || || || ||||||||||||||||| || ||||| || || |||||||| |||||    
T  28610476 ggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgtttt 28610394  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 14677269 - 14677176
Alignment:
Q  138 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcg 231  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| |||||||||||||||    
T  14677269 gccaccacggagacggagaacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcggccgtcttccagctgttttccggcg 14677176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 14677166 - 14677042
Alignment:
Q  13 cgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctg 112  Q
    ||||| || |||||||| || ||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| |    
T  14677166 cgttgttggtccggtgggattccttctttgtcttggatcttggctttcacattgtcgatggtgtctgaagattcaacttcgagggttattgtcttcccgg 14677067  T
Q  113 ttagggttttgacaaagatttgcat 137  Q
    |||||||||| || ||||| |||||    
T  14677066 ttagggttttcacgaagatctgcat 14677042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 35109664 - 35109863
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    |||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||    ||||| ||||  || || || || ||||| ||||| || ||||    
T  35109664 ggaatgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaa 35109763  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    | || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||    
T  35109764 aaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttcc 35109863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 35109892 - 35110091
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    |||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||    ||||| ||||  || || || || ||||| ||||| || ||||    
T  35109892 ggaatgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaa 35109991  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    | || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||    
T  35109992 aaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttcc 35110091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 35110120 - 35110319
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    |||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||    ||||| ||||  || || || || ||||| ||||| || ||||    
T  35110120 ggaatgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaa 35110219  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    | || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||    
T  35110220 aaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttcc 35110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 35110348 - 35110547
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    |||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||    ||||| ||||  || || || || ||||| ||||| || ||||    
T  35110348 ggaatgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaa 35110447  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    | || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||    
T  35110448 aaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttcc 35110547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 35110576 - 35110775
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    |||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||    ||||| ||||  || || || || ||||| ||||| || ||||    
T  35110576 ggaatgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaa 35110675  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    | || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||    
T  35110676 aaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttcc 35110775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 36294677 - 36294465
Alignment:
Q  15 ttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgtt 114  Q
    |||||| || || ||||| || ||||||||||| ||||| |||||||| ||||| |||||||| ||    || || ||||  || || || || || ||     
T  36294677 ttgctggtctgggggaataccctccttgtcttgtatcttggccttcacattgtcaattgtgtccgagctctctacctccaaagtaattgtcttgccagta 36294578  T
Q  115 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 214  Q
    || || || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||    
T  36294577 agagtcttcacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatctt 36294478  T
Q  215 ctagctgttttcc 227  Q
    | ||||| |||||    
T  36294477 caagctgctttcc 36294465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 36294905 - 36294705
Alignment:
Q  15 ttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgtt 114  Q
    |||||| || || |||||||| ||||||||  ||||||| ||||| || ||||| |||||||| ||    ||||| ||||  || || ||||| || |||    
T  36294905 ttgctggtctggaggaatgccctccttgtccagaatcttagcctttacattgtcaattgtgtctgagctctcaacctccaaagtaatcgtttttccagtt 36294806  T
Q  115 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 214  Q
    ||||| || ||||| || ||||| |||||||| || || |  ||||| ||||| || ||||||||||||||||| || || || ||||||| ||||||||    
T  36294805 agggtcttaacaaaaatctgcataccaccacgaagccgcaagacaagatgaagagtcgactctttctggatattataatcagccagagttcgaccgtctt 36294706  T
Q  215 c 215  Q
    |    
T  36294705 c 36294705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 35109511 - 35109635
Alignment:
Q  103 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 202  Q
    ||||| ||||| || || || ||||| || ||||| ||||| || ||||| |  ||||||||||| || |||||||||||||| ||||| || |||||||    
T  35109511 gttttgcctgtgagtgtcttaacaaaaatctgcataccaccgcgaagacgcaagacaaggtgaagagtcgactctttctggatgttgtaatcagcaagag 35109610  T
Q  203 ttctaccgtcttctagctgttttcc 227  Q
    |||| || ||||| ||||| |||||    
T  35109611 ttctgccatcttcaagctgctttcc 35109635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 31288321 - 31288387
Alignment:
Q  15 ttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaa 81  Q
    ||||||||| || ||||| |||||||||||||||||||| || || |||||||| || || ||||||    
T  31288321 ttgctgatcgggaggaataccttccttgtcttgaatcttagctttaacgttgtctatggtatcagaa 31288387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 35000008 - 35000228
Alignment:
Q  7 atcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttt 106  Q
    |||||||||||||| || || |||||||| |||||||| ||||| || |||||||| ||||| || ||||| ||    || || ||||  || || ||||    
T  35000008 atcaatcgttgctggtctgggggaatgccctccttgtcctgaattttagccttcacattgtcaatagtgtctgagctctctacctccaaagtaattgttt 35000107  T
Q  107 tccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttct 206  Q
    | || || || || || || || || ||||| |||||||| ||||| | |||||||||||| || |||||||||||||| ||||| || |||||||||||    
T  35000108 tgccagtaagagtcttcacgaaaatctgcataccaccacgaagacgcaaaacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttct 35000207  T
Q  207 accgtcttctagctgttttcc 227  Q
     || ||||| ||||| |||||    
T  35000208 gccatcttcgagctgctttcc 35000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 36459983 - 36459859
Alignment:
Q  13 cgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctg 112  Q
    |||||||| || |||||||| |||||||| || || ||||| || || || |||||||||||||| ||||| ||||| || |||||||| || |||||||    
T  36459983 cgttgctggtcaggtggaattccttccttatcctggatcttggctttgacattgtcgattgtgtcggaagactcaacctcgagggttatcgtcttccctg 36459884  T
Q  113 ttagggttttgacaaagatttgcat 137  Q
    |||||||||| || ||||| |||||    
T  36459883 ttagggttttcacgaagatctgcat 36459859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 6168519 - 6168319
Alignment:
Q  15 ttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgtt 114  Q
    |||||| || || ||||||||||||||||| |||||||| ||||| || ||||| |||||||| ||    || || ||||  || || ||||| || |||    
T  6168519 ttgctggtctgggggaatgccttccttgtcctgaatcttagcctttacattgtcaattgtgtctgagctctccacctccaaagtaatcgtttttccagtt 6168420  T
Q  115 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 214  Q
    ||||| || ||||| || ||||| |||||||| || || |  ||||| ||||| || |||||||||||||| || || || || ||||||| ||| ||||    
T  6168419 agggtcttaacaaaaatctgcataccaccacgaagtcgcaagacaagatgaagagtcgactctttctggatgttataatcagctagagttcgaccatctt 6168320  T
Q  215 c 215  Q
    |    
T  6168319 c 6168319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 33773062 - 33772938
Alignment:
Q  13 cgttgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctg 112  Q
    |||||||| ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||| |||   ||||| || || || ||||| || || |    
T  33773062 cgttgctggtccgggggaattccttccttgtcctggatcttagccttaacgttgtcgatggtgtcggaactctcaacctcgagagtgatggtctttccag 33772963  T
Q  113 ttagggttttgacaaagatttgcat 137  Q
    | |||||||| || |||||||||||    
T  33772962 tgagggttttcacgaagatttgcat 33772938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 36460086 - 36459993
Alignment:
Q  138 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcg 231  Q
    ||||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| | ||| |||||||||    
T  36460086 gccaccacgaagacgtaggacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcgtccgtcttccaactgctttccggcg 36459993  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 33775081 - 33774878
Alignment:
Q  28 ggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaa 127  Q
    ||||| |||||||| || || ||||| || || ||||||||||| ||||| ||   ||| || || |||||  |||| || || || ||||| || || |    
T  33775081 ggaattccttccttatcctggatcttggctttgacgttgtcgatggtgtcggagctttcgacctcaagggtggtggtcttgccggtgagggtcttaacga 33774982  T
Q  128 agatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 227  Q
    |||| |||||||||||||| |||| ||| ||||||||||| |||   || |||||||| |||||||| || || || | |||||| || || || |||||    
T  33774981 agatctgcatgccaccacgtagacagaggacaaggtgaagggtgctttccttctggatgttgtagtcagctagggtacgaccgtcctcgagttgctttcc 33774882  T
Q  228 ggcg 231  Q
    ||||    
T  33774881 ggcg 33774878  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 35000701 - 35000753
Alignment:
Q  16 tgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtc 68  Q
    |||||||| ||||| || |||||||||||||||||||| ||||| || |||||    
T  35000701 tgctgatcaggtgggatcccttccttgtcttgaatcttggccttaacattgtc 35000753  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 47989971 - 47989757
Alignment:
Q  16 tgctgatccggtggaatgccttccttgtcttgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgtta 115  Q
    ||||| || ||||| || |||||||||||||||||||| ||||| || ||||| ||||| || ||    || || || || || || ||||| ||||| |    
T  47989971 tgctggtcaggtgggatcccttccttgtcttgaatcttggccttgacattgtcaattgtatcggagctctccacctcaagagtgattgtttttcctgtga 47989872  T
Q  116 gggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttc 215  Q
    | || || |||||||||||||| |||||||| |||||||| || | ||| || |||||||| || ||||| ||||| || ||||| || |  ||||||||    
T  47989871 gagtcttcacaaagatttgcatcccaccacgaagacggagcaccaagtggagtgtggactccttttggatgttgtaatctgcaagggtacgcccgtcttc 47989772  T
Q  216 tagctgttttccggc 230  Q
     ||||| || |||||    
T  47989771 cagctgcttgccggc 47989757  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 24039562 - 24039450
Alignment:
Q  115 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 214  Q
    ||||| || ||||| || ||||| |||||||| || || |  ||||||||||| || |||||||| ||||| ||||| || ||||||||||| || ||||    
T  24039562 agggtcttcacaaaaatctgcataccaccacgaaggcgcaagacaaggtgaagagttgactctttttggatgttgtaatcggcaagagttctgccatctt 24039463  T
Q  215 ctagctgttttcc 227  Q
    | ||||| |||||    
T  24039462 caagctgctttcc 24039450  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 24039993 - 24039926
Alignment:
Q  139 ccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttct 206  Q
    |||||||| ||||| | |||||||||||| || ||||||||||| || |||||||| ||||| |||||    
T  24039993 ccaccacgaagacgtaaaacaaggtgaagagtagactctttctgaatgttgtagtcagcaagggttct 24039926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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