View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4945_high_2 (Length: 555)
Name: NF4945_high_2
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 11758241 - 11758716
Alignment:
| Q |
19 |
catcggaatctgaattttctcaaatttcgagaaatcgtaatgctgatgagaattgcgttatcgcgcaatcgattatgaagaattattcggataactcagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11758241 |
catcggaatctgaattttctcaaatttcgagaaatcgtaatgctgatgagaattgcgttatcgcgcaatcgattatgaagaattattcggataattcagg |
11758340 |
T |
|
| Q |
119 |
ttacgattccgatctagcttgttctgagaaactgcaattctcttactacgacgatgatgaatcggaggagtattgttcaagtcagggaactacattctcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11758341 |
ttacgattccgatctagcttgttctgagaaactgcaattctcttactacgacgatgatgaatcggaggagtattgttcaagtcagggaactacattctct |
11758440 |
T |
|
| Q |
219 |
gatgttcgctcggagattttcagtgaaggttcagattattctccgtcgcagttcattgattctggtagcgagttttcacaaggatccgttggtgaaactc |
318 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11758441 |
gatcttcactcggatattttcagtgaaggttcagattattctccgtcgcagttcattgattctggtagcgagttttcacaaggatccgttggtgaaactc |
11758540 |
T |
|
| Q |
319 |
cttctcatacttattcgttgcttcttcgataccgcgacgaattcgcgaagctaggttctccggttaaagctacttcaattgttgtagaagatttttctct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11758541 |
cttctcatacttattcgttgcttcttcgataccgcgacgaattcgcaaagctaggttctccggttaaagctacttcaattgttgtagaagatttttctct |
11758640 |
T |
|
| Q |
419 |
tcataacaatgtacgttttgtttcatcaatttcttagttcaaaatgttaataatatgctaattattctagtttaac |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11758641 |
tcataacaatgtacgttttgtttcatcaatttcttagttcaaaatgttaataatatgctaattattctagtttaac |
11758716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University