View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945_high_3 (Length: 500)
Name: NF4945_high_3
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 33186547 - 33186063
Alignment:
| Q |
1 |
aattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgacgaacatttgacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186547 |
aattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgacgaacatttgacaa |
33186448 |
T |
|
| Q |
101 |
aacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccacaaacattacaattgttcttgtcactcaaaacattacgacaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186447 |
aacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccacaaacattacaattgttcttgtcactcaaaacattacgacaatgt |
33186348 |
T |
|
| Q |
201 |
ttcttgcaacaaaaaagcaaatcatttcccttgtttgctcgaactccattgcatatattattcgtctcacggttacattgtcttcctttctttattatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186347 |
ttcttgcaacaaaaaagcaaatcatttcccttgtttgctcgaactccattgcatatattattcgtctcacggttacattgtcttcctttctttattatgc |
33186248 |
T |
|
| Q |
301 |
ttgccaagaatctacttcttgatccatgatgtgtgtcaagaacatagaaatcttgttcctcttcgtcttcatcttcaatttcatgatgatttttatcatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33186247 |
ttgccaagaatctacttcttgatccatgatgtgtgtcaagaacatagaaatcttgctcctcttcatcttcatcttcaatttcatgatgatttttatcatc |
33186148 |
T |
|
| Q |
401 |
atcattggatgaaacaaacaaggatagagagatgagtaaagagagaattattgtgagcttcaggattgtgttggccatattaatt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33186147 |
atcattggatgaaacaaacaaggatagagagatgagtaacgagagaattattgtgagctttaggattgtgttggccatattaatt |
33186063 |
T |
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