View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4945_high_5 (Length: 451)
Name: NF4945_high_5
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 36085671 - 36086096
Alignment:
| Q |
20 |
aaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaatagggaatctgacctcattcatatcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085671 |
aaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaatagggaatctgacctcattcatatcg |
36085770 |
T |
|
| Q |
120 |
tgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagattcgaaatgatgtccaagttaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085771 |
tgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagattcgaaatgatgtccaagttaa |
36085870 |
T |
|
| Q |
220 |
cattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagttcaaaccaatgatcataataa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085871 |
cattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagttcaaaccaatgatcataataa |
36085970 |
T |
|
| Q |
320 |
aaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaagagatctcattgaaacagaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085971 |
aaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaagagatctcattgaaacagaa |
36086070 |
T |
|
| Q |
420 |
tgttccttagaagtaagaataatcta |
445 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
36086071 |
tgttccttagaagtaagaagaatcta |
36086096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 40730337 - 40730108
Alignment:
| Q |
20 |
aaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaatagggaatctgacctcattcatatcg |
119 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
40730337 |
aaattcctgcatttgacaaacttaaacattcaaataaatatatcacacacgcaaaggatgaaagacaaacacaataggcaatctgacctcgttcatatcg |
40730238 |
T |
|
| Q |
120 |
tgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagattcgaaatgatgtccaagttaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40730237 |
tgtgccatgtttttcaaagtatccaatccttctgcaatcacatccaaaccttcatcctaaaagattcatataattagatttgaaatgatgtccaagttaa |
40730138 |
T |
|
| Q |
220 |
cattctacatataacatcatgcaaaagata |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40730137 |
cattctacatataacatcatgcaaaagata |
40730108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 28511073 - 28511149
Alignment:
| Q |
102 |
ctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatccta |
178 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
28511073 |
ctgacctcattcatgtcatgcgccatgtctttcaaagtatccaatccttctgcaatcatatccaaaccttgatccta |
28511149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 48393077 - 48393017
Alignment:
| Q |
384 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaataatct |
444 |
Q |
| |
|
|||| ||||||| |||| |||||||| ||||| |||| |||||||||||||||| ||||| |
|
|
| T |
48393077 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatct |
48393017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University