View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945_high_6 (Length: 424)
Name: NF4945_high_6
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 83 - 416
Target Start/End: Complemental strand, 25990191 - 25989856
Alignment:
| Q |
83 |
tatctgtatttttatgttcaagtaacactataacacactgaaattttgttttgtacaatatgatatgatataaatacactcatatacataaat----atc |
178 |
Q |
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| T |
25990191 |
tatctgtatttttatgttcaagtaacactataacacactgaaattttgttttgtacaatatgatatgatataaatacactaatatacataaatatcgatc |
25990092 |
T |
|
| Q |
179 |
tgtaacacactctctagcacatataatgtaaaatctttcnnnnnnnnnnntgtacacataatgtatatatttggcgataagtgtacaacattgtagattg |
278 |
Q |
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| T |
25990091 |
tgtaacacactttctagcacatataatgtaaaatctttc-aaaaaaaaaatgtacacataatgtatatatttggcgataagtgtacaacattgtagattg |
25989993 |
T |
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| Q |
279 |
aatgtaattgaaatgnnnnnnnnnnngtatacaaattcacattgttatgaacatatcatgcttctgcatctgcatcacgatccgtaaagaaagaaccact |
378 |
Q |
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| T |
25989992 |
aatgtaattgaaatg-aaaaaaaaaagtatacaaattcacattgttatgaacatatcatgctcctgcatctgcatcacgatccgtaaagaaagaaccact |
25989894 |
T |
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| Q |
379 |
cttacatcttctgtcactaaaagaaaatgttgatgatg |
416 |
Q |
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| T |
25989893 |
cttacatcttctgtcactaaaagaaaatgttgatgatg |
25989856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 416
Target Start/End: Complemental strand, 25322624 - 25322513
Alignment:
| Q |
305 |
gtatacaaattcacattgttatgaacatatcatgcttctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaa |
404 |
Q |
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| T |
25322624 |
gtatacaaattcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaggaaa |
25322525 |
T |
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| Q |
405 |
atgttgatgatg |
416 |
Q |
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| T |
25322524 |
atgttgatgatg |
25322513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 416
Target Start/End: Complemental strand, 26152317 - 26152206
Alignment:
| Q |
305 |
gtatacaaattcacattgttatgaacatatcatgcttctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaa |
404 |
Q |
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|||||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
26152317 |
gtatacaaattcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaggaaa |
26152218 |
T |
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| Q |
405 |
atgttgatgatg |
416 |
Q |
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| T |
26152217 |
atgttgatgatg |
26152206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 416
Target Start/End: Original strand, 25324399 - 25324486
Alignment:
| Q |
329 |
acatatcatgcttctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaaatgttgatgatg |
416 |
Q |
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|||| ||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
25324399 |
acatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg |
25324486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 416
Target Start/End: Original strand, 26154092 - 26154179
Alignment:
| Q |
329 |
acatatcatgcttctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaaatgttgatgatg |
416 |
Q |
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| T |
26154092 |
acatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg |
26154179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 25322741 - 25322682
Alignment:
| Q |
234 |
acataatgtatatatttggcgataagtgtacaacattgtagattgaatgtaattgaaatg |
293 |
Q |
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| T |
25322741 |
acataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatg |
25322682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 26152434 - 26152375
Alignment:
| Q |
234 |
acataatgtatatatttggcgataagtgtacaacattgtagattgaatgtaattgaaatg |
293 |
Q |
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| T |
26152434 |
acataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatg |
26152375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 25990495 - 25990450
Alignment:
| Q |
28 |
aagtcaccaaaattgaaattaatgcttaagtggaactgatttgaat |
73 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990495 |
aagttaccaaaattgaaattaatgcttaagtggaactgatttgaat |
25990450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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