View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945_low_11 (Length: 313)

Name: NF4945_low_11
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945_low_11
NF4945_low_11
[»] chr4 (5 HSPs)
chr4 (16-309)||(17521341-17521634)
chr4 (35-100)||(40434518-40434583)
chr4 (35-99)||(38655370-38655434)
chr4 (35-98)||(5760376-5760439)
chr4 (35-81)||(47591282-47591328)
[»] chr8 (4 HSPs)
chr8 (34-130)||(9932922-9933018)
chr8 (41-82)||(43775645-43775686)
chr8 (35-75)||(31687087-31687127)
chr8 (22-54)||(36480856-36480888)
[»] chr5 (8 HSPs)
chr5 (35-99)||(42457080-42457144)
chr5 (28-99)||(19315612-19315683)
chr5 (35-100)||(8249130-8249195)
chr5 (35-132)||(26369762-26369859)
chr5 (35-132)||(40974095-40974192)
chr5 (35-93)||(12162481-12162539)
chr5 (35-75)||(4926208-4926248)
chr5 (35-83)||(17972515-17972563)
[»] chr2 (2 HSPs)
chr2 (35-83)||(9584068-9584116)
chr2 (28-62)||(39116830-39116864)
[»] chr1 (4 HSPs)
chr1 (16-108)||(26996307-26996399)
chr1 (35-132)||(26676075-26676172)
chr1 (35-108)||(48434412-48434485)
chr1 (35-99)||(32642133-32642197)
[»] chr3 (5 HSPs)
chr3 (27-112)||(9102237-9102318)
chr3 (35-99)||(33981279-33981343)
chr3 (35-98)||(18689708-18689771)
chr3 (35-75)||(6925347-6925387)
chr3 (35-99)||(19652571-19652635)
[»] chr7 (4 HSPs)
chr7 (35-132)||(40858849-40858946)
chr7 (35-73)||(10274881-10274919)
chr7 (35-132)||(5554939-5555036)
chr7 (36-132)||(38141419-38141515)
[»] chr6 (1 HSPs)
chr6 (36-132)||(7093102-7093198)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 17521341 - 17521634
Alignment:
Q  16 cacatactccttcaccaaatcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagct 115  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  17521341 cacacactccttcaccaaatcctcctcccatgcaaacaacatacgccgccacttccacgctttcccatactcaccccaacctagagaaaacatatcagct 17521440  T
Q  116 accgtagccaatttattcgcaggcaactcaaacaatttgttaaaattagacgagagtgaaattccacctagccaagggtccttccaaaaaagagtggtag 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17521441 accgtaaccaatttattcgcaggcaactcaaacaatttgttaaaattagacgagagtgaaattccacctagccaagggtccttccaaaaaagagtggtag 17521540  T
Q  216 ccccatcaccgacctctcaaacaacccgacctcctcaatgacattattcaactgttgccaccaaaccgcaatctacctcgttcttcctcatacc 309  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17521541 ccccatcaccgacctctcaaacaagccgaccccctcaatggcattattcaactgttgccaccaaaccgcaatctacccccttcttcctcatacc 17521634  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 40434583 - 40434518
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaa 100  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||| ||||| ||||||    
T  40434583 tcctcttcccacgcaaacaacctccgcctccacttccacgcttctccattctcaccccaccctaaa 40434518  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 38655370 - 38655434
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    ||||||||||| |||||||| | ||| |||||| |||| || ||||||| |||||||||||||||    
T  38655370 tcctcctcccaggcaaacaaacgacgtcgccacctccaagcctccccattctctccccaacctaa 38655434  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 5760439 - 5760376
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaaccta 98  Q
    |||||||||||||| ||||||||||||| |||   ||||||||| |||| ||| ||||||||||    
T  5760439 tcctcctcccacgctaacaacctacgcctccaacgccacgcttcaccatcctccccccaaccta 5760376  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 47591282 - 47591328
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttcccc 81  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||||    
T  47591282 tcctcctcccaagcaaacaaacgacgccgccacttccaagcttcccc 47591328  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 9932922 - 9933018
Alignment:
Q  34 atcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaattta 130  Q
    |||||||||||| |||||||| | ||||||||||||||| |||||||| |  |||||||| || || ||| |||| ||||| ||||| |||| ||||    
T  9932922 atcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaaacgaatacatttcagccaccgttgccatttta 9933018  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 43775686 - 43775645
Alignment:
Q  41 tcccacgcaaacaacctacgccgccacttccacgcttcccca 82  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  43775686 tcccacgcaaacaacctacgccgccacctccaagcctcccca 43775645  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 31687087 - 31687127
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgc 75  Q
    ||||||||||||||||||||||| |||| |||| |||||||    
T  31687087 tcctcctcccacgcaaacaacctccgcctccacctccacgc 31687127  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 36480888 - 36480856
Alignment:
Q  22 ctccttcaccaaatcctcctcccacgcaaacaa 54  Q
    |||||||||||||||||||||||| ||||||||    
T  36480888 ctccttcaccaaatcctcctcccatgcaaacaa 36480856  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 42457144 - 42457080
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    ||||||||||||||||||||||| |||| |||||||||||| || |||| ||| ||||| |||||    
T  42457144 tcctcctcccacgcaaacaacctccgcctccacttccacgcctcaccattctccccccaccctaa 42457080  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 19315612 - 19315683
Alignment:
Q  28 caccaaatcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    |||||| ||||||||||||||||||||||| |||| |||| ||||||| || || | ||| |||||||||||    
T  19315612 caccaactcctcctcccacgcaaacaacctccgcctccacctccacgcctcaccctcctccccccaacctaa 19315683  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 8249130 - 8249195
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaa 100  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||||| |||| ||| ||||| ||||||    
T  8249130 tcctcttcccatgcaaacaacctccgcctccacttccacgcttctccattctcaccccaccctaaa 8249195  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 26369762 - 26369859
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    ||||||||||| |||||||| | ||||||||||||||| |||||||| |  |||||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  26369762 tcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaagcgaatacatttcagccaccgttgccattttatt 26369859  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 40974095 - 40974192
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    ||||||||||| || ||||||| ||||||||||||||| ||||| || | ||||||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  40974095 tcctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctctccccacccaagtgaatacatttcagccaccgttgccattttatt 40974192  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 12162539 - 12162481
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctcccca 93  Q
    |||||||||||||| || |||||||| |||||||||||||| || |||| ||| |||||    
T  12162539 tcctcctcccacgccaataacctacgtcgccacttccacgcctctccattctcccccca 12162481  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 4926248 - 4926208
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgc 75  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  4926248 tcctcctcccatgcaaacaacctccgcctccacttccacgc 4926208  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 17972515 - 17972563
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccat 83  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||||| ||||    
T  17972515 tcctcttcccatgcaaacaaccttcgcctccacttccacgcttctccat 17972563  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 9584068 - 9584116
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccat 83  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  9584068 tcctcctcccacgcaaacaacctccgcctccacttccacgcatccccat 9584116  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 39116864 - 39116830
Alignment:
Q  28 caccaaatcctcctcccacgcaaacaacctacgcc 62  Q
    |||||| ||||||||||||||||||||||||||||    
T  39116864 caccaattcctcctcccacgcaaacaacctacgcc 39116830  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 26996307 - 26996399
Alignment:
Q  16 cacatactccttcaccaaatcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacat 108  Q
    |||| |||||| ||||||| |||||||||||||||| ||||| |||| |||||||||| | || |||  | |||||||| |||||| ||||||    
T  26996307 cacacactcctccaccaaagcctcctcccacgcaaataacctccgcctccacttccacacctcaccacccactccccaatctaaagcaaacat 26996399  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 26676172 - 26676075
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    ||||||||||| |||||||| | |||||||||||||||  ||||||| |  |||||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  26676172 tcctcctcccaagcaaacaaacgacgccgccacttccaaacttccccctcttctccccacccaagcgaatacatttcagccaccgttgccattttatt 26676075  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 48434412 - 48434485
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacat 108  Q
    ||||||||||| |||||||| | ||| | |||| |||| || ||||||| ||||||||||||||| | ||||||    
T  48434412 tcctcctcccaggcaaacaaacgacgtctccacctccaagcatccccatcctctccccaacctaaggcaaacat 48434485  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 32642133 - 32642197
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    ||||||||||| |||||||| ||||| | |||| |||| ||  |||||| |||||||||||||||    
T  32642133 tcctcctcccaggcaaacaatctacgtctccacctccaagccaccccattctctccccaacctaa 32642197  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 9102318 - 9102237
Alignment:
Q  27 tcaccaaatcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatca 112  Q
    |||| ||||||||||||||||||   ||||||| ||||||||||||||| |||||||||||| ||| ||  | |||||||||||||    
T  9102318 tcacaaaatcctcctcccacgca---aacctacaccgccacttccacgc-tccccatactcttccctactaagagaaaacatatca 9102237  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 33981279 - 33981343
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    ||||||||||| |||||||| ||||| | |||| |||| || ||||||| |||||||||||||||    
T  33981279 tcctcctcccaggcaaacaatctacgtctccacctccaagcctccccattctctccccaacctaa 33981343  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 18689771 - 18689708
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaaccta 98  Q
    |||||||||||||| ||||||||||||| |||   ||||||||| |||| ||| ||||||||||    
T  18689771 tcctcctcccacgctaacaacctacgcctccaacgccacgcttcaccatcctccccccaaccta 18689708  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 6925387 - 6925347
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgc 75  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  6925387 tcctcctcccacgcgaacaacctacgcttccacttccacgc 6925347  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 19652635 - 19652571
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaa 99  Q
    ||||||||||| |||||||| | ||| | |||| |||| || ||||||| |||||||||||||||    
T  19652635 tcctcctcccaggcaaacaatcgacgtctccacctccaagcctccccattctctccccaacctaa 19652571  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 40858849 - 40858946
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    ||||||||||| |||||||| | ||||||||||||||| |||||||| |  |||||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  40858849 tcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaagcgaatacatttcagccaccgttgccattttatt 40858946  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 10274919 - 10274881
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccac 73  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  10274919 tcctcctcccacgcaaacaaccttcgcctccacttccac 10274881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 5555036 - 5554939
Alignment:
Q  35 tcctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    ||||||||||| || ||||||| ||||||||||||||| ||||| || | ||| ||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  5555036 tcctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatacatttcagccaccgttgccattttatt 5554939  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 38141515 - 38141419
Alignment:
Q  36 cctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    |||||||||| || ||||||| ||||||||||||||| ||||| || | ||| ||||| || |  ||| |||| ||||| ||||| |||| ||||||    
T  38141515 cctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatacatttcagccaccgttgccattttatt 38141419  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 7093198 - 7093102
Alignment:
Q  36 cctcctcccacgcaaacaacctacgccgccacttccacgcttccccatactctccccaacctaaagaaaacatatcagctaccgtagccaatttatt 132  Q
    |||||||||| || ||||||| ||||||||||||||| ||||| || | ||| ||||| || |  ||| |||||||||| ||||| |||| ||||||    
T  7093198 cctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatacatatcagccaccgttgccattttatt 7093102  T

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