View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945_low_13 (Length: 251)
Name: NF4945_low_13
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 4146310 - 4146063
Alignment:
| Q |
1 |
aagaaactcaaagttcgacgaggcatcaaacttaacnnnnnnntctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146310 |
aagaaactcaaagttcgacgaggcatcaaacttaacaaaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctc |
4146211 |
T |
|
| Q |
101 |
caacaactatttatatatacacataaagagactaaagggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146210 |
caacaactatttatatatacacataaagagactaaagggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgag |
4146111 |
T |
|
| Q |
201 |
ttgacttctaagttcttttgtttttatttgtacaagaataatctaccc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4146110 |
ttgacttctaagttcttttgtttttatttgtacaagaaaaagctaccc |
4146063 |
T |
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