View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4945_low_4 (Length: 490)
Name: NF4945_low_4
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4945_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 8930522 - 8930040
Alignment:
| Q |
1 |
ttcaacaaacccacgatgcattcagatttgtcgtattaattaaaaccacaatttcataaataaacaaaaaatgcaatttctgtattgttcttgagtnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8930522 |
ttcaacaaacccacgatgcattcagatttgtcgtattaattaaaaccacaatttcataaataaacaaaaaacgcaatttctgtattgttcttgagtaaaa |
8930423 |
T |
|
| Q |
101 |
nnnnntcgattatggtttccggactctgcatatgcaaaaactttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatc |
200 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930422 |
aaaaatcgagtatggtttccggactctgcatacgcaaaaactttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatc |
8930323 |
T |
|
| Q |
201 |
ttatacaacacaaacttgtttcagtttaacaccactagattatgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930322 |
ttatacaacacaaacttgtttcagtttaacaccaatagattttgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacaca |
8930223 |
T |
|
| Q |
301 |
gattggtgaagttgtatttgtggtcctaatcaagaatattatgac-aaagttgaaattctccatacaaattttataaatcagagtgaatattaatactat |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930222 |
gattggtgaagttgtatttgtggtcctaatcaagaatattatgactaaagttgaaattctccatacaaattttataaatcagagtgaatattaatactat |
8930123 |
T |
|
| Q |
400 |
tatctaatatacttagtttagttacaaaccttaaaccgccctactttttctgcttctttctaattatttaatttccctatgct |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930122 |
tatctaatatacttagtttagttacaaaccttaaaccgccctactttttctgcttctttctaattatttaatttccctatgct |
8930040 |
T |
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