View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945_low_8 (Length: 406)

Name: NF4945_low_8
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945_low_8
NF4945_low_8
[»] chr3 (5 HSPs)
chr3 (5-100)||(19377694-19377789)
chr3 (18-58)||(19355826-19355866)
chr3 (22-61)||(19416064-19416103)
chr3 (166-222)||(25079971-25080027)
chr3 (234-286)||(25080051-25080103)
[»] chr1 (2 HSPs)
chr1 (119-220)||(5716960-5717065)
chr1 (226-318)||(29360204-29360295)
[»] chr6 (5 HSPs)
chr6 (230-327)||(1094485-1094582)
chr6 (230-321)||(1090726-1090817)
chr6 (120-324)||(34249316-34249536)
chr6 (157-222)||(1094401-1094466)
chr6 (22-61)||(13663978-13664017)
[»] chr8 (6 HSPs)
chr8 (214-324)||(25391407-25391515)
chr8 (214-324)||(25358376-25358484)
chr8 (214-324)||(25678031-25678139)
chr8 (226-317)||(9229313-9229403)
chr8 (125-214)||(9229196-9229290)
chr8 (225-258)||(44300536-44300569)
[»] chr2 (1 HSPs)
chr2 (173-300)||(40709182-40709308)
[»] chr5 (3 HSPs)
chr5 (230-324)||(39777361-39777455)
chr5 (237-324)||(32743653-32743739)
chr5 (167-222)||(16098351-16098406)
[»] scaffold0009 (1 HSPs)
scaffold0009 (214-324)||(3251-3360)
[»] scaffold0466 (1 HSPs)
scaffold0466 (157-324)||(8244-8420)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 19377694 - 19377789
Alignment:
Q  5 tttcttttcctagcttctttcatactacaatatttctacataatcatattcaaacaccttgcgatcaatcacatggtaaaaacattaagaaaacaa 100  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||    
T  19377694 tttcttttcctagcttctttcgtactccaatatttcttcataatcatattcaaacactctacgatcaatcacatggtataaacattaagaaaacaa 19377789  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19355826 - 19355866
Alignment:
Q  18 cttctttcatactacaatatttctacataatcatattcaaa 58  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  19355826 cttctttcatactccaatatttgtacataatcatattcaaa 19355866  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 19416064 - 19416103
Alignment:
Q  22 tttcatactacaatatttctacataatcatattcaaacac 61  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  19416064 tttcatattccaatatttctacataatcatattcaaacac 19416103  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 25079971 - 25080027
Alignment:
Q  166 aagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaatttccggtgga 222  Q
    |||||| ||||||||| |||| |||| ||||| | ||||||||||||||||| ||||    
T  25079971 aagagatttgttgtgcagtggcaaaagccactgctctgaaagcaaatttccgctgga 25080027  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 25080051 - 25080103
Alignment:
Q  234 ggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgag 286  Q
    |||||| ||||  ||||||||||||  ||||||||||||| ||||||||||||    
T  25080051 ggtttttctccgtaaggtttacacaattgtgtgtctgaactcgtgcactcgag 25080103  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 5717065 - 5716960
Alignment:
Q  119 gtgttggaaatattaagagaaaactagaa----gagagttaagaaagatataagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaattt 214  Q
    ||||||||||||||||||| |||||||||    |||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  5717065 gtgttggaaatattaagagtaaactagaatttagagagttaggaaagatagaagagagttgttgtgccgtggtaaaaaccactgccctgaatgcaaattt 5716966  T
Q  215 ccggtg 220  Q
    ||||||    
T  5716965 ccggtg 5716960  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 29360295 - 29360204
Alignment:
Q  226 caatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgc 318  Q
    ||||||||| ||||||||| ||||||||||||| ||| |||||||||  |||||||| |||||| |||||||||||| ||||| |||||||||    
T  29360295 caatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcgtgcacttgaggcc-aaacacgatggagcttcataaacaatgc 29360204  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 1094485 - 1094582
Alignment:
Q  230 atccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgcccaaaaatg 327  Q
    |||||||||||||||| |||||||||||| ||| |||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||    
T  1094485 atccggttttgctccctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacacgatggagcttcacaaacaatgctcaataatg 1094582  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 1090726 - 1090817
Alignment:
Q  230 atccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgccca 321  Q
    |||||||||| ||||||||| |||||||| ||  |||||||||| ||  |||||||||||| ||||||| |||  |||||||||||||||||    
T  1090726 atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcctgaacacgacggagtttcacaaacaatgccca 1090817  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 324
Target Start/End: Complemental strand, 34249536 - 34249316
Alignment:
Q  120 tgttggaaatattaagagaaaactaga----agagagttaagaaagat--ataagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaatt 213  Q
    |||||||||||||||||||||||||||    ||||||||| ||| |||  | |||||  ||||||||||||||  ||||||| | | ||||||| |||||    
T  34249536 tgttggaaatattaagagaaaactagaattgagagagttaggaatgatagagaagagttttgttgtgccgtggtcaaaaccattgctctgaaagaaaatt 34249437  T
Q  214 tccggtgg-----------aatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatgga 302  Q
    | ||||||           ||  || ||||| ||||||||||||||| |||||| | |||  ||||||||| ||||||||||||  | ||||||||||||    
T  34249436 ttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatc-aaacacgatgga 34249338  T
Q  303 ccttcacaaacaatgcccaaaa 324  Q
     ||||| |||||||||||||||    
T  34249337 gcttcataaacaatgcccaaaa 34249316  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 1094401 - 1094466
Alignment:
Q  157 gaaagatataagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaatttccggtgga 222  Q
    |||||||| ||||||||||||||||||||  ||||  ||||  ||||||||||||||| |||||||    
T  1094401 gaaagatagaagagagttgttgtgccgtgacaaaagtcactgtcctgaaagcaaattttcggtgga 1094466  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 13664017 - 13663978
Alignment:
Q  22 tttcatactacaatatttctacataatcatattcaaacac 61  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  13664017 tttcatattccaatatttctacataatcatattcaaacac 13663978  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 25391515 - 25391407
Alignment:
Q  214 tccggtggaatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaac 313  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||  | |||  |||| ||||| ||||    
T  25391515 tccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgaggcc--agcactttggagcttcataaac 25391418  T
Q  314 aatgcccaaaa 324  Q
    |||||||||||    
T  25391417 aatgcccaaaa 25391407  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 25358484 - 25358376
Alignment:
Q  214 tccggtggaatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaac 313  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||| ||  | |||  |||| ||||| ||||    
T  25358484 tccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgagacc--agcactttggagcttcataaac 25358387  T
Q  314 aatgcccaaaa 324  Q
    |||||||||||    
T  25358386 aatgcccaaaa 25358376  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 25678139 - 25678031
Alignment:
Q  214 tccggtggaatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaac 313  Q
    ||||||| ||| |||||||||||||||||  |||||||||||||| ||  || ||||||| |||||||||||||||  | || | |||| ||||||||||    
T  25678139 tccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc--agcatgttggagcttcacaaac 25678042  T
Q  314 aatgcccaaaa 324  Q
    |||||||||||    
T  25678041 aatgcccaaaa 25678031  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 9229313 - 9229403
Alignment:
Q  226 caatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatg 317  Q
    |||||||||||||||||| ||||||||||||||  ||  ||||||||| ||||||||  ||| | |||||| ||||| ||||||||||||||    
T  9229313 caatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggc-aaacacaatggagcttcacaaacaatg 9229403  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 9229196 - 9229290
Alignment:
Q  125 gaaatattaagagaaaactagaa----gagagttaagaaa-gatataagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaattt 214  Q
    |||||||||||||  ||||||||    |||||||| |||| |||| |||||| ||||||||||||||  ||||||||| | ||||||| ||||||    
T  9229196 gaaatattaagagtgaactagaattgagagagttaggaaaagatagaagagaattgttgtgccgtggccaaaaccactactctgaaagaaaattt 9229290  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 44300569 - 44300536
Alignment:
Q  225 acaatatccggttttgctccccaaggtttacaca 258  Q
    ||||||||| ||||||||||||||||||||||||    
T  44300569 acaatatccagttttgctccccaaggtttacaca 44300536  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 40709308 - 40709182
Alignment:
Q  173 ttgttgtgccgtggaaaaaaccacttccctgaaagcaaatttccggtggaatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaa 272  Q
    ||||| ||||||||  |||| |||| ||||||||| |||||||||||| ||  ||||||||||||||||||||||| |||||||   |||  ||||||||    
T  40709308 ttgttatgccgtggccaaaatcactgccctgaaagtaaatttccggtgcaacccaatatccggttttgctccccaaagtttacattactgcatgtctgaa 40709209  T
Q  273 cccgtgcactcgaggcctaaacacgatg 300  Q
    ||| ||||||||||||| ||||||||||    
T  40709208 cccatgcactcgaggcc-aaacacgatg 40709182  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 39777455 - 39777361
Alignment:
Q  230 atccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgcccaaaa 324  Q
    ||||||||||||||||||| ||||||||| ||| |||| ||||||  ||||||||||| || ||||||||||| |||||  ||||||||||||||    
T  39777455 atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgaggtctgaacacgatggagcttcaataacaatgcccaaaa 39777361  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 32743653 - 32743739
Alignment:
Q  237 tttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgcccaaaa 324  Q
    |||||||||||||||||||||| |||  ||||||||| | |||||| |||||| |||||||||||| ||||||||||||| |||||||    
T  32743653 tttgctccccaaggtttacacaactgcttgtctgaactcatgcacttgaggcc-aaacacgatggagcttcacaaacaatacccaaaa 32743739  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 16098351 - 16098406
Alignment:
Q  167 agagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaatttccggtgga 222  Q
    ||||| || |||||||||||  ||||||||| ||||||||||||| ||||||||||    
T  16098351 agagatttattgtgccgtggccaaaaccactaccctgaaagcaaaattccggtgga 16098406  T

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Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 3251 - 3360
Alignment:
Q  214 tccggtggaatacaatatccggttttgctccccaaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaac 313  Q
    ||||||| ||| ||||||||| |||| |||| ||||||||| |||  |  |||||||||||||||||||||||| | |||||||||||| |||||||||     
T  3251 tccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgaggtc-aaacacgatggagcttcacaaat 3349  T
Q  314 aatgcccaaaa 324  Q
    |||| ||||||    
T  3350 aatgtccaaaa 3360  T

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Target: scaffold0466 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 8244 - 8420
Alignment:
Q  157 gaaagatataagagagttgttgtgccgtggaaaaaaccacttccctgaaagcaaatttcc-----------ggtggaatacaatatccggttttgctccc 245  Q
    |||||||| ||||||||||||| ||||||| |||| | ||| || |||||||||||||||           |||| |||  |||||||||||||||||||    
T  8244 gaaagatagaagagagttgttgcgccgtggcaaaagcaactgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccc 8343  T
Q  246 caaggtttacacatctgtgtgtctgaacccgtgcactcgaggcctaaacacgatggaccttcacaaacaatgcccaaaa 324  Q
    ||| ||||||||| ||  |||||||||| |||||||| |||||   | |||| |||| ||||||||||||| |||||||    
T  8344 caatgtttacacaactacgtgtctgaactcgtgcacttgaggc--tagcacgttggagcttcacaaacaatacccaaaa 8420  T

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