View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946-Insertion-10 (Length: 311)
Name: NF4946-Insertion-10
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 38627627 - 38627445
Alignment:
| Q |
8 |
aaatttttatgttcgttttctctaacacgatcttatgttaacaatatcttaatataagaagttgca---agtggtaagtgatatctacttgggtctaatt |
104 |
Q |
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| T |
38627627 |
aaatttttatgttcagtatctctaacacgatcttatgttaacaatatcttaatataagaagttgcatgaagtggtaaatgatatctacttgaatctaatt |
38627528 |
T |
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| Q |
105 |
ggttattgaactatatttctctttaattatctatgatatcagaagttgcatgaagtggtaagtgatacctagttgggtataat |
187 |
Q |
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| T |
38627527 |
ggttattgaactatatttctctttaattatctatgatatcagaagttgcatgaagtggtaagtgatacctagttgggtataat |
38627445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 38627429 - 38627379
Alignment:
| Q |
261 |
ggcttgtgcaataaatatatttacaaggtatatcaatacacatttgtagca |
311 |
Q |
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| T |
38627429 |
ggcttgtgcaataaatgtatttacgaggtatatcaatacacatttgtagca |
38627379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 38627576 - 38627488
Alignment:
| Q |
140 |
atatcagaagttgcatgaagtggtaagtgatacctagttgggtataattgggttattgaaccacatttttctttaattatctaggatatc |
229 |
Q |
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| T |
38627576 |
atataagaagttgcatgaagtggtaaatgatatctacttgaatctaattgg-ttattgaactatatttctctttaattatctatgatatc |
38627488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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