View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946-Insertion-11 (Length: 189)
Name: NF4946-Insertion-11
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946-Insertion-11 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 11445642 - 11445823
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445642 |
caaagatgaagctaattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11445741 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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| T |
11445742 |
ataaagctgtatatatgtttgtacagatggatttgagcatgatatagctgactttcttcactgccattgctactggaatcca |
11445823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 11547448 - 11547267
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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| T |
11547448 |
caaagatgaagctaattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11547349 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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| T |
11547348 |
ataaagctgtatatatgtttgtacagatggatttgagcatgataaaactgactttcttcactgccattgctactggaatcca |
11547267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 11507217 - 11507036
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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| T |
11507217 |
caaagatgaagctaattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
11507118 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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| T |
11507117 |
ataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatcca |
11507036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 11468614 - 11468795
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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|||||||||||||||||||| || |||||| || ||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
11468614 |
caaagatgaggctaattcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaactt |
11468713 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
11468714 |
ataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatcca |
11468795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 11522847 - 11522666
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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| T |
11522847 |
caaagatgaggctaattcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaactt |
11522748 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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| T |
11522747 |
ataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatcca |
11522666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 34784028 - 34783870
Alignment:
| Q |
9 |
aaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattta |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| | | |
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| T |
34784028 |
aaagatgaggctaattcagaaagagtcattggttttccatggttatggattgcatcagctatgcctagttccatggctgatttgagtgccatggaactaa |
34783929 |
T |
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| Q |
109 |
taaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttca |
167 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||||| || | |||||||||| |
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| T |
34783928 |
caaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34783870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 34775808 - 34775649
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||| | |
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| T |
34775808 |
caaagatgaggctagttcagaaagagtcattggttttccatggttgtgaattgcatcagctatgcctagttccatggctgatttgagagccatggaacta |
34775709 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttca |
167 |
Q |
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| |||| |||||| ||||||||| |||||||||||||||||||| || | |||||||||| |
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| T |
34775708 |
acaaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34775649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 1874 - 1693
Alignment:
| Q |
8 |
caaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
107 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1874 |
caaagatgaagctaattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
1775 |
T |
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| Q |
108 |
ataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttcactgccattgctaatgaaatcca |
189 |
Q |
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| T |
1774 |
ataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatcca |
1693 |
T |
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