View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946-Insertion-4 (Length: 428)
Name: NF4946-Insertion-4
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 1792805 - 1792384
Alignment:
| Q |
8 |
gtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagcttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaa |
107 |
Q |
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| T |
1792805 |
gtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagcttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaa |
1792706 |
T |
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| Q |
108 |
tagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacattctttgagccaagggttttgtcattgccacgtttacccatgttttcctcta |
207 |
Q |
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| T |
1792705 |
tagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacattctttgaaccaagggttttgtcattgccacgtttacccatgttttcctcta |
1792606 |
T |
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| Q |
208 |
aatttgacaacgattaagaaagtcccaagaataaaagac-nnnnnnngtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcaaattt |
306 |
Q |
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| T |
1792605 |
aatttgacaacgattaagaaagtcccaagaataaaagacaaaaaaaagtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcaaattt |
1792506 |
T |
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| Q |
307 |
gtataagcttccatgccttttttgcaaagtttcatgccttatgggaattgtgagtttttgcataaattatgcaaccnnnnnnngtgttttatttcaggtc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1792505 |
gtataagcttccatgccttttttgcaaagtttcatgccttatgggaattgtgagtttttgcataaattatgcaacctttttttgtgttttatttcaggtc |
1792406 |
T |
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| Q |
407 |
aatttggggaagtgcttttcaa |
428 |
Q |
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| T |
1792405 |
aatttagggaagtgcttttcaa |
1792384 |
T |
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