View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946-Insertion-7 (Length: 350)
Name: NF4946-Insertion-7
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946-Insertion-7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 129 - 350
Target Start/End: Original strand, 23359768 - 23359989
Alignment:
| Q |
129 |
agggaattagttaaagtgttattaatgataatttcacgatagttgaatttgaacttaacactttaaagttacgttatatttacagtaatgttatttgtag |
228 |
Q |
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| T |
23359768 |
agggaattagttaaagtgttattaatgataatttcacgatagttgaatttgaacttaacactttaaagttacgttatatttagagtaatgttatttgtag |
23359867 |
T |
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| Q |
229 |
cgacattttttataatgaattcctcacgaattctttttcatccaataaaataagatactgactggaaaacatggggttggtgggtatagttgaggctaaa |
328 |
Q |
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| T |
23359868 |
cgacattttttctaatgaattcctcacgaattcttttccatccaataaaataagatattgatcggaaaacatggggtggatgggtatagttgaggctaaa |
23359967 |
T |
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| Q |
329 |
ttttcaactatgtagcatttaa |
350 |
Q |
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| T |
23359968 |
ttttcaactgtgtagcatttaa |
23359989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 23359629 - 23359737
Alignment:
| Q |
7 |
aaaaccaaatccaagttacgaggtaatttttataattgttatttgcatattacatattcactctgtttttcttaacattggagaaatgaaatattttatt |
106 |
Q |
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| T |
23359629 |
aaaaccaaatccaaattacgaggtaatttttacaattgttatatgcatattacatattcactctgtttttcttaacattggagaaat-aaatattttatt |
23359727 |
T |
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| Q |
107 |
aattaaagtg |
116 |
Q |
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| T |
23359728 |
aattaaagtg |
23359737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 22838731 - 22838598
Alignment:
| Q |
214 |
taatgttatttgtagcgacattttttataatgaattcctcacgaattctttttcatccaataaaataagatactgactggaaaacatggggttggtgggt |
313 |
Q |
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| T |
22838731 |
taatgttatttgtagcgacatttctcatgacgaagtcctcacgaattgtattctatccaattaaataaggtgctggccggaaatcataggatgatggggt |
22838632 |
T |
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| Q |
314 |
atagttgaggctaaattttcaactatgtagcatt |
347 |
Q |
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| T |
22838631 |
ataattgaggctgaattttcaattgtgtagcatt |
22838598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 13377486 - 13377536
Alignment:
| Q |
210 |
acagtaatgttatttgtagcgacattttttataatgaattcctcacgaatt |
260 |
Q |
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| T |
13377486 |
acagtaatgctatttgtagcgacattttttataacgaagtacttacgaatt |
13377536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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