View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4946_high_10 (Length: 412)
Name: NF4946_high_10
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 17433227 - 17432847
Alignment:
| Q |
13 |
catcatcatccaggaatggagatgtgtgccaagggatgagtggagttatatttgaagnnnnnnnnngtatgcaattgattaagtggaaacattagatggg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17433227 |
catcatcatccaggaatggagatgtgtgccaagggatgagtggagttatatttgaaggaaaaaaaagtatgcaattgattaagtggaaacattagatggg |
17433128 |
T |
|
| Q |
113 |
atgttatccaaattgaatccgacgataactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17433127 |
atgttatccaaattgaatccgacgataactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaa |
17433028 |
T |
|
| Q |
213 |
tttctctgaatttaaaaacgatcaaaactaagtctagtctttatggttcgatacaatttatttttgataaaaccgacacaatacttaatattgtatgagg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17433027 |
tttctctgaatttaaaaacgatcaaaactaagtccagtctttgtggttcgatacaatttatttttgataaaaccaacacaatacttaatattgtatgagg |
17432928 |
T |
|
| Q |
313 |
ataggtaaggatcatctttatcactctcttctatggcctgagttctcaagttgtatattctatatgcatttgaggtggtag |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432927 |
ataggtaaggatcatctttatcactctcttctatggtctgagttctcaagttgtatattctatatgcatttgaggtggtag |
17432847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 16550808 - 16550631
Alignment:
| Q |
139 |
aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatc-aa |
237 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |||||||| | |||||||||||| || ||| ||||||||| ||||||| | || ||| || |
|
|
| T |
16550808 |
aactttctctaaacttgtcatattttacttgcgatcctgctaccaaaacaacttttacaaac-ttaatttagaatttctttgaattttagaaatatcaaa |
16550710 |
T |
|
| Q |
238 |
aactaagtctagtctttatggttcgatacaatttatttttgataaaaccgacacaatacttaatattgtatgaggatag |
316 |
Q |
| |
|
||||| | ||||| | ||||| ||||| |||||||| |||||||| | ||| |||||||| | ||||| |||||||| |
|
|
| T |
16550709 |
aactatgaggagtctctgtggtttgatacgatttatttatgataaaatcaacataatacttactgttgtacgaggatag |
16550631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 283
Target Start/End: Complemental strand, 13002211 - 13002070
Alignment:
| Q |
139 |
aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaa |
238 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||||||| | | ||||||||| ||||||| ||||||||| | ||||||| ||||| || |
|
|
| T |
13002211 |
aactttctc-aaacttatcatattttacttgtgatcctactaccaaaac-atttttacaaa-tttgatttagaatttctttaaatttaagtacgattgaa |
13002115 |
T |
|
| Q |
239 |
actaagtctagtctttatggttcgatacaatttatttttgataaa |
283 |
Q |
| |
|
|||||| | ||| | |||||||||||||||||||||||||||| |
|
|
| T |
13002114 |
actaagcacaatctatgtggttcgatacaatttatttttgataaa |
13002070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 283
Target Start/End: Complemental strand, 13076869 - 13076728
Alignment:
| Q |
139 |
aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaa |
238 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||||||| | | ||||||||| ||||||| ||||||||| | ||||||| ||||| || |
|
|
| T |
13076869 |
aactttctc-aaacttatcatattttacttgtgatcctactaccaaaac-atttttacaaa-tttgatttagaatttctttaaatttaagtacgattgaa |
13076773 |
T |
|
| Q |
239 |
actaagtctagtctttatggttcgatacaatttatttttgataaa |
283 |
Q |
| |
|
|||||| | || | |||||||||||||||||||||||||||| |
|
|
| T |
13076772 |
actaagcacaatcgatgtggttcgatacaatttatttttgataaa |
13076728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 32268582 - 32268673
Alignment:
| Q |
191 |
ttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaaactaagtctagtctttatggttcgatacaatttatttttgataa |
282 |
Q |
| |
|
|||||||||| || ||| |||||| || ||||||||| ||||||| |||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
32268582 |
ttttacaaaccttaatttagaattcctgtgaatttaagaacgatcgaaactaagcgcggtctttgtggatcgatacaatttatttttgataa |
32268673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 39326912 - 39326884
Alignment:
| Q |
259 |
ttcgatacaatttatttttgataaaaccg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39326912 |
ttcgatacaatttatttttgataaaaccg |
39326884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 31611364 - 31611321
Alignment:
| Q |
256 |
tggttcgatacaatttatttttgataaaaccgacacaatactta |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
31611364 |
tggttcgatacattttatttttgataaaaccggcataatactta |
31611321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 11222475 - 11222443
Alignment:
| Q |
267 |
aatttatttttgataaaaccgacacaatactta |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
11222475 |
aatttatttttgataaaaccgacataatactta |
11222443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University