View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4946_high_11 (Length: 410)
Name: NF4946_high_11
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 1753934 - 1754030
Alignment:
| Q |
305 |
tcaaattctttgataacaaaattgtttttcgtttgttgtgaaatatctgtcactttgttttatacttttgcaaataaacatgttacaatatctgtgc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1753934 |
tcaaattctttgataacaaaattgtttttcgtttgttgtgaaatatctgtcactttgttttatacttttgcaaataaacatgttacaatatctgtgc |
1754030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1753367 - 1753491
Alignment:
| Q |
1 |
tcttcattgcaacttcatttctctaaagaataattatacttttcttttcattcatgtagaaaattaact----------atgtttgtattcaatgaaaat |
90 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1753367 |
tcttcattgcaacttcatttccctaaagattaattatacttttc-----atccatgtagaaaattaactgaatattgagatgtttgtattcaatgaaaat |
1753461 |
T |
|
| Q |
91 |
taagtgaatttttattacattttttagtgt |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
1753462 |
taagtgaatttttattacactttttagtgt |
1753491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 1753787 - 1753847
Alignment:
| Q |
248 |
tgttcagtttagacataattattggataagaatttagatagcaaagacatggtttcttcaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1753787 |
tgttcagtttagacataattattggataagaatttagatagcaaaaacatggtttcttcaa |
1753847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 1753710 - 1753763
Alignment:
| Q |
185 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
238 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1753710 |
taatatttctacatttctcatgaaaagtgtcatatatttacaacttcacaagtc |
1753763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 1753513 - 1753551
Alignment:
| Q |
118 |
tgtacgagcatgtgtgaatttgttacagatttcttatat |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1753513 |
tgtacgagcatgtgtgaatttgttacagatttcttatat |
1753551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 27504217 - 27504164
Alignment:
| Q |
185 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
238 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27504217 |
taatatttctccatttctcatgaaaagtgtcatatatttacaacttcacaagtc |
27504164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 27478715 - 27478768
Alignment:
| Q |
185 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
238 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
27478715 |
taatatttctccatttctcatgaaaagtgtcataaatttacaacttcacaagtc |
27478768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 27509150 - 27509106
Alignment:
| Q |
185 |
taatatttctacatttctcatcaaaagtgtcatatatttacaact |
229 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27509150 |
taatatttctccatttctcatgaaaagtgtcatatatttacaact |
27509106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27475422 - 27475464
Alignment:
| Q |
196 |
catttctcatcaaaagtgtcatatatttacaacttcacaagtc |
238 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
27475422 |
catttctcatgaaaagagtcatatatttacaacttcacaagtc |
27475464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 27522986 - 27522947
Alignment:
| Q |
264 |
aattattggataagaatttagatagcaaagacatggtttct |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
27522986 |
aattattggata-gaatttagatagcaaaaacatggtttct |
27522947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University