View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_high_14 (Length: 327)

Name: NF4946_high_14
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_high_14
NF4946_high_14
[»] chr4 (5 HSPs)
chr4 (112-308)||(1507813-1508020)
chr4 (78-306)||(4222244-4222492)
chr4 (78-291)||(13714638-13714871)
chr4 (112-308)||(5573507-5573715)
chr4 (257-295)||(13714873-13714911)
[»] chr7 (3 HSPs)
chr7 (112-309)||(19804202-19804412)
chr7 (215-308)||(3076910-3077004)
chr7 (120-158)||(4343043-4343081)
[»] scaffold0158 (1 HSPs)
scaffold0158 (112-309)||(12286-12496)
[»] chr6 (5 HSPs)
chr6 (154-308)||(28146738-28146897)
chr6 (78-244)||(5129259-5129445)
chr6 (112-277)||(26618653-26618828)
chr6 (112-277)||(26724564-26724739)
chr6 (197-309)||(5248133-5248246)
[»] chr3 (2 HSPs)
chr3 (112-308)||(14529020-14529222)
chr3 (192-308)||(19357427-19357544)
[»] chr2 (1 HSPs)
chr2 (190-308)||(2694205-2694324)
[»] chr1 (2 HSPs)
chr1 (171-308)||(22212366-22212507)
chr1 (253-308)||(15089781-15089837)
[»] chr8 (2 HSPs)
chr8 (192-308)||(5559650-5559767)
chr8 (192-299)||(34149676-34149784)
[»] chr5 (3 HSPs)
chr5 (154-309)||(23880087-23880243)
chr5 (192-308)||(41530285-41530402)
chr5 (192-306)||(37366655-37366770)
[»] scaffold0060 (1 HSPs)
scaffold0060 (263-309)||(38862-38908)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 112 - 308
Target Start/End: Original strand, 1507813 - 1508020
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaa----------agttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||          ||||||||| ||||||||| ||||||||||  ||||||||||||    
T  1507813 aaatgctcttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatattttattccccatagtctgttgaaataa 1507912  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattaccatttgtccttccct-aaaaaattccaaagataaaataacttatactgaatttttacatgcggg 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1507913 tatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttccctaaaaaaattccaaagataaaataacttatactgaatttttacatgcggg 1508012  T
Q  301 gtattaca 308  Q
    ||||||||    
T  1508013 gtattaca 1508020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 306
Target Start/End: Original strand, 4222244 - 4222492
Alignment:
Q  78 tttcatgtttt-tcttatttatatccttaggtaagaaatgccc---------ttttctacactcttcttcaaactaaaatatcctataaa---------- 157  Q
    ||||||||||| |||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||| |||||              
T  4222244 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgcccttttctacactctttttcaaactaaaatatccgataaaatatcgtaaa 4222343  T
Q  158 agttttaagtgaaatatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatttgtccttccctaaaaa 257  Q
    ||||||||| |||||||||||||  |||||  ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  4222344 agttttaagcgaaatatttcattttccatagtctgttgaaataatatgtttcagtcccgaaaagtcttattcacaattaccatttgtccttccctaaaaa 4222443  T
Q  258 attccaaagataaaataacttatactgaatttttacatgcggggtatta 306  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4222444 attccaaagataaaataacttatactaaatttttacatgcggggtatta 4222492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 13714638 - 13714871
Alignment:
Q  78 tttcatgtttt-tcttatttatatccttaggtaagaaatgccc---------ttttctacactcttcttcaaactaaaatatcctataaa---------- 157  Q
    ||||||||||| |||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||| |||||              
T  13714638 tttcatgttttgtcttatttatatccttaggtaagaaaagcccaaaatgctcttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaa 13714737  T
Q  158 agttttaagtgaaatatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatttgtccttccctaaaaa 257  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  13714738 agttttaagcgaaatatttcattctccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttcctaaaaaa 13714837  T
Q  258 attccaaagataaaataacttatactgaattttt 291  Q
    ||| ||||||||||||||||||||||||||||||    
T  13714838 atttcaaagataaaataacttatactgaattttt 13714871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 308
Target Start/End: Complemental strand, 5573715 - 5573507
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaaa----------gttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||||          ||||||| |||||||||||| || |||||  | ||||||||||    
T  5573715 aaatgcccttttctacactcttgttcaaactagaatatccgataaaataccgtaaaagttttaaatgaaatatttcaatcaccatagtccgttgaaataa 5573616  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattacca-tttgtccttccct-aaaaaattccaaagataaaataacttatactgaatttttacatgcgg 299  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| ||| |||| ||||||||||||    
T  5573615 tatgtttcaatcctgaaaagtcttgtgcacaattaccattttgtccttccctaaaaaaattcaaaagataaaataactgatattgaacttttacatgcgg 5573516  T
Q  300 ggtattaca 308  Q
    |||||||||    
T  5573515 ggtattaca 5573507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 13714873 - 13714911
Alignment:
Q  257 aattccaaagataaaataacttatactgaatttttacat 295  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  13714873 aattccaaagataaaataacttgcactgaatttttacat 13714911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 19804202 - 19804412
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaa----------agttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||          ||||||||| |||||| |||||||||||||  | ||||||||||    
T  19804202 aaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaagcgaaatacttcattccccatagtccgttgaaataa 19804301  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattacca-tttgtccttccct--aaaaaattccaaagataaaataacttatactgaatttttacatgcg 298  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  19804302 tatgtttcagtcctgaaaagtcttatgcacaattaccattttgtctgtccctaaaaaaaattccaaagataaaataactgatactgaatttttacatgcg 19804401  T
Q  299 gggtattacat 309  Q
    |||||||||||    
T  19804402 gggtattacat 19804412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 3077004 - 3076910
Alignment:
Q  215 tgaaaagtcttatgcacaattacca-tttgtccttccctaaaaaattccaaagataaaataacttatactgaatttttacatgcggggtattaca 308  Q
    ||||||||||||||||||||||||| |||| ||||| ||  ||||||  ||||||| ||||||| ||| |||||||||||||  |||| ||||||    
T  3077004 tgaaaagtcttatgcacaattaccattttgcccttctcttgaaaattttaaagatagaataactgatattgaatttttacatatggggaattaca 3076910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 4343043 - 4343081
Alignment:
Q  120 ttttctacactcttcttcaaactaaaatatcctataaaa 158  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  4343043 ttttctacactcttcttcaaaccaaaatatccgataaaa 4343081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 12496 - 12286
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaaa----------gttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||          |||||||| |||||| |||||||||||||  | ||||||||||    
T  12496 aaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaagcgaaatacttcattccccataatccgttgaaataa 12397  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattacca-tttgtccttccc--taaaaaattccaaagataaaataacttatactgaatttttacatgcg 298  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||||||||||||| ||    
T  12396 tatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccgtcccaaaaaaaaattccaaagataaaataactgatactgaatttttacatacg 12297  T
Q  299 gggtattacat 309  Q
    |||||||||||    
T  12296 gggtattacat 12286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 28146738 - 28146897
Alignment:
Q  154 taaaagttttaagtgaaatatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattacca-tttgtccttccct 252  Q
    |||||||||||||  |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28146738 taaaagttttaagcaaaatatttcattccccatagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccttccct 28146837  T
Q  253 ----aaaaaattccaaagataaaataacttatactgaatttttacatgcggggtattaca 308  Q
        |||| ||| ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  28146838 gaaaaaaagatttcaaagttaaaataactgatactgaatttttacatgcgggatattaca 28146897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 5129445 - 5129259
Alignment:
Q  78 tttcatgtttt-tcttatttatatccttaggtaagaaat---------gcccttttctacactcttcttcaaactaaaatatcc----------tataaa 157  Q
    ||||||||||| ||||||||||||| |||||||||||||         |||||||||||||||||||||||||| |||||||||           |||||    
T  5129445 tttcatgttttgtcttatttatatctttaggtaagaaatgcccaaaatgcccttttctacactcttcttcaaaccaaaatatccgataaaatatcataaa 5129346  T
Q  158 agttttaagtgaaatatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatttgt 244  Q
    | ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  5129345 aattttaagcgaaatatttcattccccatagtctgttgaaataatatgtttcagtcccgaaaagttttatacacaattaccatttgt 5129259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 277
Target Start/End: Complemental strand, 26618828 - 26618653
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaaag----------ttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||           ||||||| |||||||||| |||||| ||  ||| |  |||||    
T  26618828 aaatgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaatattttaagcgaaatatttctttccccgtagtctggt--aataa 26618731  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattaccatttgtccttccct--aaaaaattccaaagataaaataact 277  Q
    ||||||| ||||  ||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  26618730 tatgttttagtcacgaaaagtcttatgcagaattaccatttgtccttccttacaaaaaattccaaagataaaataact 26618653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 277
Target Start/End: Complemental strand, 26724739 - 26724564
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaaag----------ttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||           ||||||| |||||||||| |||||| ||  ||| |  |||||    
T  26724739 aaatgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaatattttaagcgaaatatttctttccccgtagtctggt--aataa 26724642  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattaccatttgtccttccct--aaaaaattccaaagataaaataact 277  Q
    ||||||| ||||  ||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  26724641 tatgttttagtcacgaaaagtcttatgcagaattaccatttgtccttccttacaaaaaattccaaagataaaataact 26724564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 5248246 - 5248133
Alignment:
Q  197 aataatatgtttcagtcctgaaaagtcttatgcacaattaccatt-tgtccttccctaaaaaattccaaagataaaataacttatactgaatttttacat 295  Q
    ||||||||| ||  |||||| | |||||||||||||||||||||| || ||||  || ||||||||||| |||  ||||||| |||||||||||||| ||    
T  5248246 aataatatgatttggtcctgcacagtcttatgcacaattaccattatgcccttttcttaaaaattccaatgattgaataactgatactgaatttttatat 5248147  T
Q  296 gcggggtattacat 309  Q
    |  || ||||||||    
T  5248146 gtcggatattacat 5248133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 308
Target Start/End: Complemental strand, 14529222 - 14529020
Alignment:
Q  112 aaatgcccttttctacactcttcttcaaactaaaatatcctataaaa----------gttttaagtgaaatatttcattccccatacactgttgaaataa 201  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||          |||||||||||||||||||||||||||||  | ||            
T  14529222 aaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaagtgaaatatttcattccccatagtccgt-------- 14529131  T
Q  202 tatgtttcagtcctgaaaagtcttatgcacaattacca-tttgtccttccct---aaaaaattccaaagataaaataacttatactgaa-tttttacatg 296  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||| ||| |||| ||||||||||    
T  14529130 -atgtttcagtcctgaaaagtcttatgcacaattaccattttgtccttccctaaaaaaaaattccaaagataaaataactgatattgaattttttacatg 14529032  T
Q  297 cggggtattaca 308  Q
    ||||||||||||    
T  14529031 cggggtattaca 14529020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 19357544 - 19357427
Alignment:
Q  192 gttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactgaatttt 290  Q
    |||| ||||||||| ||| |||||||||||| || || ||| ||||||||| ||||||| || |||  |||||| |||||||||||| ||||||||||||    
T  19357544 gttggaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttt 19357445  T
Q  291 tacatgcggggtattaca 308  Q
    |||||||||| |||||||    
T  19357444 tacatgcgggttattaca 19357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 2694324 - 2694205
Alignment:
Q  190 ctgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactgaatt 288  Q
    |||||| ||||||||| ||| |||||||||||| || || ||||||||||||| ||||||| || |||  |||||| |||||||||||| || |||||||    
T  2694324 ctgttggaataatatgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatgctgaatt 2694225  T
Q  289 tttacatgcggggtattaca 308  Q
    ||||||||||||||||||||    
T  2694224 tttacatgcggggtattaca 2694205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 22212366 - 22212507
Alignment:
Q  171 atatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatttgtcc-ttccct---aaaaaattccaaag 266  Q
    |||||||||||||| |   | |||| ||||||||||||| |||||||||||||||||||||||||  |||||  || ||| ||   ||||||||||||||    
T  22212366 atatttcattccccgttgtccgttggaataatatgtttcggtcctgaaaagtcttatgcacaattttcattttacccttctcttaaaaaaaattccaaag 22212465  T
Q  267 ataaaataacttatactgaatttttacatgcggggtattaca 308  Q
    |||||| |||||||||| |||||||||||| |||||||||||    
T  22212466 ataaaagaacttatactaaatttttacatgtggggtattaca 22212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 15089781 - 15089837
Alignment:
Q  253 aaaaaattccaaagataaaataacttatactgaa-tttttacatgcggggtattaca 308  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |||||||||||    
T  15089781 aaaaaattccaaagataaaagaacttatactgaattttttacatctggggtattaca 15089837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 5559650 - 5559767
Alignment:
Q  192 gttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactgaatttt 290  Q
    |||||||||||||| ||| |||||||||||| || || ||| ||||||||| ||||||| || |||  |||||| |||||||||||| ||||||||||||    
T  5559650 gttgaaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttt 5559749  T
Q  291 tacatgcggggtattaca 308  Q
    |||||||||| |||||||    
T  5559750 tacatgcgggttattaca 5559767  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 34149784 - 34149676
Alignment:
Q  192 gttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatttgtcc--ttccctaaaaaattccaaagataaaataacttatactgaattt 289  Q
    |||| ||||||||| |||  ||||||||| |||||||||||||||||| |||| |  ||| |  |||||||||||||||| ||||||| ||  |||||||    
T  34149784 gttggaataatatgattcgatcctgaaaattcttatgcacaattacca-ttgtacatttctcataaaaattccaaagatagaataactaatgttgaattt 34149686  T
Q  290 ttacatgcgg 299  Q
    |||| |||||    
T  34149685 ttacttgcgg 34149676  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 23880243 - 23880087
Alignment:
Q  154 taaaagttttaagtgaaatatttcattccccatacactgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccatt-tgtccttccct 252  Q
    ||||||||||||| || |||||||||||| | ||  | |||||||||||||| | | || || |||||||||||||| |||||||||| || | ||| ||    
T  23880243 taaaagttttaagcgagatatttcattcctcgtagtccgttgaaataatatgatacggttcttaaaagtcttatgcaaaattaccattatgcctttctct 23880144  T
Q  253 aaaaaattccaaagataaaataacttatactgaatttttacatgcggggtattacat 309  Q
     ||||||||||| |||| ||||||| ||||| |||||||| |||| |||||||||||    
T  23880143 taaaaattccaaggatataataactgatacttaatttttatatgcagggtattacat 23880087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 41530285 - 41530402
Alignment:
Q  192 gttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactgaatttt 290  Q
    |||| ||||||||| ||| |||||||||||| || || ||| ||||||||| ||||||| || |||  |||||| |||||||||| | ||||||||||||    
T  41530285 gttggaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataattgatactgaatttt 41530384  T
Q  291 tacatgcggggtattaca 308  Q
    |||||||||| |||||||    
T  41530385 tacatgcgggttattaca 41530402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 37366770 - 37366655
Alignment:
Q  192 gttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactgaatttt 290  Q
    |||| ||||||||| |||  ||||||||||| || || ||||||||||||| ||| ||| || |||  |||||| |||||||||||| |||||||||| |    
T  37366770 gttggaataatatgattcgatcctgaaaagttttgtgaacaattaccattttgtctttctcttaaattttccaatgataaaataactgatactgaattct 37366671  T
Q  291 tacatgcggggtatta 306  Q
    ||||||| | ||||||    
T  37366670 tacatgctgtgtatta 37366655  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 38908 - 38862
Alignment:
Q  263 aaagataaaataacttatactgaatttttacatgcggggtattacat 309  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  38908 aaagataaaataactaatactgaatctttacatgcgggatattacat 38862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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