View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_high_26 (Length: 225)

Name: NF4946_high_26
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_high_26
NF4946_high_26
[»] chr5 (2 HSPs)
chr5 (14-208)||(42859508-42859703)
chr5 (76-105)||(43065378-43065407)
[»] chr7 (5 HSPs)
chr7 (14-208)||(12197454-12197651)
chr7 (124-206)||(9741519-9741602)
chr7 (124-208)||(10290432-10290519)
chr7 (124-206)||(48655607-48655688)
chr7 (77-121)||(10531046-10531091)
[»] chr4 (4 HSPs)
chr4 (14-206)||(49496787-49496980)
chr4 (92-208)||(41947391-41947513)
chr4 (124-206)||(8362660-8362743)
chr4 (77-121)||(3294769-3294814)
[»] chr6 (3 HSPs)
chr6 (14-207)||(25003749-25003946)
chr6 (14-208)||(34635113-34635312)
chr6 (80-134)||(16110252-16110307)
[»] chr3 (6 HSPs)
chr3 (14-207)||(16473883-16474080)
chr3 (83-206)||(15997429-15997555)
chr3 (76-140)||(35409996-35410060)
chr3 (124-208)||(16974247-16974334)
chr3 (77-122)||(19545769-19545814)
chr3 (164-208)||(46405627-46405671)
[»] scaffold0657 (1 HSPs)
scaffold0657 (14-208)||(5461-5660)
[»] chr1 (6 HSPs)
chr1 (15-122)||(37668650-37668757)
chr1 (76-134)||(24274817-24274875)
chr1 (124-202)||(9538418-9538496)
chr1 (124-208)||(21265984-21266071)
chr1 (124-206)||(29387728-29387810)
chr1 (164-208)||(336936-336980)
[»] chr8 (2 HSPs)
chr8 (76-208)||(21233003-21233136)
chr8 (163-208)||(42078519-42078564)
[»] chr2 (6 HSPs)
chr2 (76-208)||(16132341-16132474)
chr2 (76-134)||(19710390-19710449)
chr2 (77-122)||(28502838-28502884)
chr2 (124-208)||(12775950-12776037)
chr2 (164-208)||(40446312-40446356)
chr2 (164-208)||(32736619-32736663)
[»] scaffold0807 (1 HSPs)
scaffold0807 (80-139)||(1190-1250)
[»] scaffold0618 (1 HSPs)
scaffold0618 (164-208)||(5118-5162)
[»] scaffold0413 (1 HSPs)
scaffold0413 (160-208)||(7665-7713)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 42859508 - 42859703
Alignment:
Q  14 attattctggtatcctttgatttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggtaa 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42859508 attattctagtatcctttgatttgtttttatgaagaaactctaccttaattagttttctgaatttatagttttgaggacgaaactattttaagggggtaa 42859607  T
Q  114 taatgtaacg-cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  42859608 taatgtaacgccccaatattttatatatgttttgtttaatgatattttggacttgtcacttagttgttcaacaatttaatttatatgcgagaaact 42859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 43065407 - 43065378
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaa 105  Q
    ||||||||||||||||||||||||||||||    
T  43065407 tttctagtttcgaggacgaaactattttaa 43065378  T

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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 12197651 - 12197454
Alignment:
Q  14 attattctggtatcctttgatttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggtaa 113  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||||    
T  12197651 attattctagtatcctttgatttgtttttacgaagaaactctaccttaattagtattctgaatttctagtttcggagaagaaactattttaa-ggggtaa 12197553  T
Q  114 taatgtaacg-cccaatattttatatatgttttgtttaatgatatttttgacttgtcac---ttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||    
T  12197552 taatgtaacgccccaatattttatatatgttttttttaatgatatttttgacttgtcactaattagttgttcaacaatttattttatatgcgagaaact 12197454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 9741519 - 9741602
Alignment:
Q  124 cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaattta-gtttatatgcgagaaa 206  Q
    ||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||| ||||  ||||| |||||||||    
T  9741519 cccaatattttatatatgtatttttaaatgatttttttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaa 9741602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 10290519 - 10290432
Alignment:
Q  124 cccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||||||||||||||||||||| |||   |||||| || |||| ||||||| |||||||||||||||||| ||||| |||||||||||    
T  10290519 cccaatattttatatatgttttttttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaact 10290432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 48655688 - 48655607
Alignment:
Q  124 cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaa 206  Q
    ||||||| ||||||||||| |  || |||||| || ||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  48655688 cccaataatttatatatgtatc-ttaaatgattttcttgacttgtaacttagttgttcaacaatttattttatgtgcgagaaa 48655607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 10531091 - 10531046
Alignment:
Q  77 ttctagtttcgaggacgaaacta-ttttaagggggtaataatgtaa 121  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  10531091 ttctagtttcgaggacgaaacaatttttaagggggtaataatgtaa 10531046  T

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Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 49496787 - 49496980
Alignment:
Q  14 attattctggtatcctttgattt-gtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 112  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  49496787 attattctagtatcctttgattttgtttttatgaagaaactctaccttaattagtcttatgaatttctagtttcgaggacgaaactattttaagggggta 49496886  T
Q  113 ataatgtaac-gcccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaa 206  Q
    ||||||||||  ||| |||||||||||||||  | | ||||||| || ||||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  49496887 ataatgtaacatcccgatattttatatatgtaat-tctaatgattttcttgacttgtcatttagttggtcaacaatttattttatgtgcgagaaa 49496980  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 41947513 - 41947391
Alignment:
Q  92 cgaaactattttaagggggtaataatgtaacgc-ccaatattttatatatgttttgttt-----aatgatatttttgacttgtcacttagttgttcaaca 185  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| || || |||     ||| || || ||||||||||||||||||||||||||    
T  41947513 cgaaactattttaagggagtaataatgtaacgctccaatattttatatacgtatttttttttaaaattattttcttgacttgtcacttagttgttcaaca 41947414  T
Q  186 atttagtttatatgcgagaaact 208  Q
    ||||| |||||| | ||||||||    
T  41947413 atttattttataagtgagaaact 41947391  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 8362660 - 8362743
Alignment:
Q  124 cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaattta-gtttatatgcgagaaa 206  Q
    ||||||||||||||||||| || || |||||| || |||||||||||||||||||||||||| ||||  ||||| |||||||||    
T  8362660 cccaatattttatatatgtatttttaaatgattttcttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaa 8362743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 3294769 - 3294814
Alignment:
Q  77 ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa 121  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3294769 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 3294814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 25003749 - 25003946
Alignment:
Q  14 attattctggtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 112  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25003749 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 25003848  T
Q  113 ataatgtaacg-cccaatattttatatatgttttgttt--aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaac 207  Q
    | ||||||||  ||| ||||||||||||||| || ||   ||| || || ||| |||| ||||||||||||||||||||||  | || ||||||||||    
T  25003849 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttatatcatgtgcgagaaac 25003946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 34635113 - 34635312
Alignment:
Q  14 attattctggtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 112  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34635113 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctggatttctagtttcgaggacgaaactattttaagggggta 34635212  T
Q  113 ataatgtaac-gcccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    | ||||||||  ||| ||||||||||||||| || |||   ||| || || |||||||| || || ||||||||  |||||| ||||| |||||||||||    
T  34635213 agaatgtaacatcccgatattttatatatgtatttttttaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaact 34635312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 16110307 - 16110252
Alignment:
Q  80 tagtttcgaggacgaaactattttaagggggtaataatgtaacgccc-aatatttt 134  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  16110307 tagtttagaggacgaaactattttaaggggataataatgtaacgccctaatatttt 16110252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 16473883 - 16474080
Alignment:
Q  14 attattctggtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 112  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16473883 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 16473982  T
Q  113 ataatgtaacg-cccaatattttatatatgttttgttt--aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaac 207  Q
    | ||||||||  ||| ||||||||||||||| || ||   ||| || || ||| |||| ||||||||||||||||||||||  | || ||||||||||    
T  16473983 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttatatcatgtgcgagaaac 16474080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 15997555 - 15997429
Alignment:
Q  83 tttcgaggacgaaactattttaagggggtaataatgtaacgccc-aatattttatatatgt-tttgtttaatgatattt-ttgacttgtcacttagttgt 179  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| || ||| ||| |   ||||| ||||||||||||||||||||    
T  15997555 tttcgaggacgaaactattttaagaggggaataatgtaacgccctaatattttatatacgtattttttttaaattatttcttgacttgtcacttagttgt 15997456  T
Q  180 tcaacaatttagtttatatgcgagaaa 206  Q
    | | ||||||| |||||| | ||||||    
T  15997455 taagcaatttattttataagtgagaaa 15997429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 35409996 - 35410060
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacg-cccaatattttatatat 140  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  35409996 tttctagtttcgaggacgaaactattttaa-ggggtaataatgtaacgccccaatattttatatat 35410060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 16974247 - 16974334
Alignment:
Q  124 cccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    ||||||||||||||||||| || |||   ||| || || |||||||| |||||||||||||||||||||| ||||| ||||| |||||    
T  16974247 cccaatattttatatatgtattttttttaaataatcttcttgacttgccacttagttgttcaacaatttattttatgtgcgataaact 16974334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 19545814 - 19545769
Alignment:
Q  77 ttctagtttcgaggacgaaactattttaagggggtaataatgtaac 122  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  19545814 ttctagtttcgaggacgaaactattttaaagggataataatgtaac 19545769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 46405671 - 46405627
Alignment:
Q  164 cttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  46405671 cttgccacttagttgttcaacaatttattttatgtgcgagaaact 46405627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 5660 - 5461
Alignment:
Q  14 attattctggtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 112  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5660 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgtatttctagtttcgaggacgaaactattttaagggggta 5561  T
Q  113 ataatgtaac-gcccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    | ||||||||  ||| ||||||||||||||| || | |   ||| || || |||||||| || || ||||||||  |||||| ||||| |||||||||||    
T  5560 agaatgtaacatcccgatattttatatatgtattttattaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaact 5461  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 37668757 - 37668650
Alignment:
Q  15 ttattctggtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggtaa 113  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37668757 ttattctagcatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaa-ggggtaa 37668659  T
Q  114 taatgtaac 122  Q
    |||||||||    
T  37668658 taatgtaac 37668650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 24274817 - 24274875
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacgcccaatatttt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24274817 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacgcccaatatttt 24274875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 9538496 - 9538418
Alignment:
Q  124 cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcga 202  Q
    |||||||||||||||||||  | || |||||| || ||||||||||||||||||| ||||||||||| ||||| |||||    
T  9538496 cccaatattttatatatgtaattttaaatgattttcttgacttgtcacttagttggtcaacaatttattttatgtgcga 9538418  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 21266071 - 21265984
Alignment:
Q  124 cccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    ||||||||||||||||||| || |||   |||||| || |||| ||||||| |||||||||||||||||| ||||| |||||||||||    
T  21266071 cccaatattttatatatgtattttttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaact 21265984  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 29387728 - 29387810
Alignment:
Q  124 cccaatattttatatatgttttgtttaatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaa 206  Q
    |||||||||||||||||||  | || |||||  || | ||||||||||||||||| ||||||||||| ||||| |||||||||    
T  29387728 cccaatattttatatatgtaattttaaatgactttctcgacttgtcacttagttggtcaacaatttattttatgtgcgagaaa 29387810  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 336936 - 336980
Alignment:
Q  164 cttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  336936 cttgccacttagttgttcaacaatttattttatgtgcgagaaact 336980  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 21233136 - 21233003
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacg-cccaatattttatatatgttttgtttaatgatatttttgacttgtcactta 174  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| || || |||||| || |||| ||||||| |     
T  21233136 tttctaattttgaggacgaaactattttaagtgggtaataatgtaacatcccaatattttatatatgtatttttaaatgattttcttgagttgtcacctg 21233037  T
Q  175 gttgttcaacaatttagtttatatgcgagaaact 208  Q
     ||||||||||||||| |||||||||||||||||    
T  21233036 attgttcaacaatttattttatatgcgagaaact 21233003  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 42078564 - 42078519
Alignment:
Q  163 acttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  42078564 acttgtcacttagttgttcaacaatttattttataagcgagaaact 42078519  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 16132474 - 16132341
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacgccc-aatattttatatatgttttgtttaatgatatttttgacttgtcactta 174  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| || || |||||| || |||| ||||||| ||    
T  16132474 tttctagtattgaggacgaaactattttaagagggtaataatgtaacgccccaatattttacatatgtatttttaaatgattttcttgagttgtcaccta 16132375  T
Q  175 gttgttcaacaatttagtttatatgcgagaaact 208  Q
     ||||||||||||||| ||||| |||||||||||    
T  16132374 attgttcaacaatttattttatgtgcgagaaact 16132341  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 19710449 - 19710390
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaagggggtaataatgtaac-gcccaatatttt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  19710449 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacaccccaatatttt 19710390  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 28502884 - 28502838
Alignment:
Q  77 ttctagtttcgaggacgaaactatttt-aagggggtaataatgtaac 122  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  28502884 ttctagtttcgaggatgaaactatttttaagggggtaataatgtaac 28502838  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 12776037 - 12775950
Alignment:
Q  124 cccaatattttatatatgttttgttt---aatgatatttttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    ||||||||||||||||||| || |||   ||| || || |||||||  ||||||| |||||||||||||| ||||| |||||||||||    
T  12776037 cccaatattttatatatgtatttttttaaaataatcttcttgactttccacttagctgttcaacaatttattttatgtgcgagaaact 12775950  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 40446312 - 40446356
Alignment:
Q  164 cttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  40446312 cttgccacttagttgttcaacaatttattttatgtgcgagaaact 40446356  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 32736663 - 32736619
Alignment:
Q  164 cttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| ||| |||||||||||||||||| ||||| |||||||||||    
T  32736663 cttgccacctagttgttcaacaatttattttatgtgcgagaaact 32736619  T

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Target: scaffold0807 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 1250 - 1190
Alignment:
Q  80 tagtttcgaggacgaaactattttaagggggtaataatgtaacg-cccaatattttatata 139  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  1250 tagtttcgaggacgaaactgttttaagggggtaataatgtaacgacccaaaattttatata 1190  T

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Target: scaffold0618 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 5118 - 5162
Alignment:
Q  164 cttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  5118 cttgccacttagttgttcaacaatttattttatgtgcgagaaact 5162  T

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Target: scaffold0413 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 7665 - 7713
Alignment:
Q  160 ttgacttgtcacttagttgttcaacaatttagtttatatgcgagaaact 208  Q
    |||| ||||||| |||||||||||||||||| ||||| |||||||||||    
T  7665 ttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaact 7713  T

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