View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4946_high_6 (Length: 526)
Name: NF4946_high_6
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 46 - 516
Target Start/End: Complemental strand, 50264706 - 50264232
Alignment:
| Q |
46 |
catttacaacattctactttggtaggtaaagattcattgatcacttttgcccccactccttgttttgtgtatataaa-gcaaacaataaatgtaatgcca |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50264706 |
catttacaacattctactttggtaggtaaagattcattgatcacttttgcccccactccttgttttgtgtatataaaagcaaacaataaatgtaatgcct |
50264607 |
T |
|
| Q |
145 |
acaaagtacaaacccaatcacccccaaataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264606 |
acaaagtacaaacccaatcacccccaaataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaa |
50264507 |
T |
|
| Q |
245 |
ccttatcccacaacatggtaaaaaccatcaaca---ccaaggttcttgtgttgttgaggaaattaaagggctaattaacgtacacaaagatggatatata |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
50264506 |
ccttatcccacaacatggtaaaaaccatcaacaacaccaaggttcttgtgttgttgaggaaattaaagggctaattaaagtacataaagatggatatata |
50264407 |
T |
|
| Q |
342 |
gaacgacccaacattgttccatgtgtcacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttggg |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264406 |
gaacgacccaacattgttccatgtgtcacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttggg |
50264307 |
T |
|
| Q |
442 |
cacgtttctatgttccaaattcttcacnnnnnnnnctacctttgttagtgtattttcatggtggtggtttctgtg |
516 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264306 |
cacgtttctatgttccaaattctccacaaaaaaaactacctttgttagtgtattttcatggtggtggtttctgtg |
50264232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University