View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_high_9 (Length: 426)

Name: NF4946_high_9
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_high_9
NF4946_high_9
[»] chr8 (2 HSPs)
chr8 (19-364)||(3780800-3781145)
chr8 (132-176)||(3771887-3771931)
[»] chr3 (4 HSPs)
chr3 (269-364)||(17765462-17765561)
chr3 (269-364)||(19066782-19066881)
chr3 (270-324)||(30080996-30081050)
chr3 (288-364)||(32981396-32981476)
[»] chr4 (1 HSPs)
chr4 (269-329)||(24550635-24550695)
[»] chr5 (1 HSPs)
chr5 (306-364)||(41593088-41593149)
[»] chr6 (2 HSPs)
chr6 (277-331)||(7142166-7142220)
chr6 (277-331)||(8681348-8681402)
[»] chr1 (3 HSPs)
chr1 (272-318)||(50665442-50665488)
chr1 (270-326)||(23318474-23318530)
chr1 (297-352)||(50665496-50665554)
[»] scaffold0257 (1 HSPs)
scaffold0257 (279-364)||(21672-21759)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 3780800 - 3781145
Alignment:
Q  19 ggaaacccatatcgagctcacatctaaatcacctcttctaattaccttaaacttaagcctcccccatcaccatagaaaggagggtctatactaatgtgct 118  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  3780800 ggaaacccatatcgaactcacatctaaatcaccccttctaattaccttaaacttaagcctcccccatcgccatagaaaggagggtctatactgatgtgct 3780899  T
Q  119 caccgcaagtacaaacacaaagaagatttatataataaaaacgaattaaatcattaatctagcctcttaattatttaacttacttcaatttaatgcttaa 218  Q
    ||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3780900 cacggcaagtacaaatacaaagaagatttatataat-aaaatgaattaaatcattaatttagcctcttaattattcaacttacttcaatttaatgcttaa 3780998  T
Q  219 actatatacaatggaattggaatttctagctttatatnnnnnnnnncattggaattggataataaggaaaagaaagagaaaataaattgattttatattt 318  Q
    ||||||||||||||||||| ||||||| ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3780999 actatatacaatggaattgaaatttcttgctttata--aaaaaaaacattggaattggataataaggaaaagaaagagaaaataaattgattttatattt 3781096  T
Q  319 tacaaaat---taccaagcacataaaattaaggtgatcataaatttaag 364  Q
    ||||||||   ||| ||||||||||||||||||||||| ||||||||||    
T  3781097 tacaaaattactactaagcacataaaattaaggtgatcgtaaatttaag 3781145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 3771887 - 3771931
Alignment:
Q  132 aacacaaagaagatttatataataaaaacgaattaaatcattaat 176  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||    
T  3771887 aacacaaagaagatttatataataaaaatgaaataaaccattaat 3771931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 17765462 - 17765561
Alignment:
Q  269 ggaattggataataaggaaaagaaagagaaaataaattga-ttttatattttacaaaattacc---aagcacataaaattaaggtgatcataaatttaag 364  Q
    |||||||||||||||||| ||||||||| |||  |||||| ||||||||||| ||||| || |   ||||||||||||||||||||||||| | ||||||    
T  17765462 ggaattggataataaggagaagaaagagtaaacgaattgatttttatatttttcaaaactatcattaagcacataaaattaaggtgatcatgagtttaag 17765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 19066782 - 19066881
Alignment:
Q  269 ggaattggataataaggaaaagaaagagaaaataaattga-ttttatattttacaaaattacc---aagcacataaaattaaggtgatcataaatttaag 364  Q
    |||||||||||||||||| ||||||||| |||  |||||| ||||||||||| ||||| || |   ||||||||||||||||||||||||| | ||||||    
T  19066782 ggaattggataataaggagaagaaagagtaaacgaattgatttttatatttttcaaaactatcattaagcacataaaattaaggtgatcatgagtttaag 19066881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 30081050 - 30080996
Alignment:
Q  270 gaattggataataaggaaaagaaagagaaaataaattgattttatattttacaaa 324  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||||||||| ||||    
T  30081050 gaattggataataaagtgaagaaagagaaaacaaattggttttatatttttcaaa 30080996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 32981396 - 32981476
Alignment:
Q  288 aagaaagagaaaataaattga-ttttatattttacaaaattacca---agcacataaaattaaggtgatcataaatttaag 364  Q
    ||||||||| ||| ||||||| ||||||||||| ||||| |||||   |||||||||||||||| ||||||| | ||||||    
T  32981396 aagaaagagtaaacaaattgaattttatattttgcaaaactaccattaagcacataaaattaagctgatcatgagtttaag 32981476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 24550635 - 24550695
Alignment:
Q  269 ggaattggataataaggaaaagaaagagaaaataaattgattttatattttacaaaattac 329  Q
    |||||||||||| ||| | ||||||||| ||| || |||||||||||||||||||||||||    
T  24550635 ggaattggataaaaagaagaagaaagagtaaacaatttgattttatattttacaaaattac 24550695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 41593088 - 41593149
Alignment:
Q  306 tgattttatattttacaaaattacca---agcacataaaattaaggtgatcataaatttaag 364  Q
    ||||||||||||||  ||||||||||   |||||||||||||||||||||||||| ||||||    
T  41593088 tgattttatattttgtaaaattaccatgaagcacataaaattaaggtgatcataagtttaag 41593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 7142220 - 7142166
Alignment:
Q  277 ataataaggaaaagaaagagaaaataaattgattttatattttacaaaattacca 331  Q
    |||||||||| ||||||||| ||| ||||||||||| |||||||||| |||||||    
T  7142220 ataataaggagaagaaagagtaaacaaattgattttgtattttacaagattacca 7142166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 8681402 - 8681348
Alignment:
Q  277 ataataaggaaaagaaagagaaaataaattgattttatattttacaaaattacca 331  Q
    |||||||||| ||||||||| ||| ||||||||||| |||||||||| |||||||    
T  8681402 ataataaggagaagaaagagtaaacaaattgattttgtattttacaagattacca 8681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 50665442 - 50665488
Alignment:
Q  272 attggataataaggaaaagaaagagaaaataaattgattttatattt 318  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  50665442 attggataataaggagaagaaagagtaaacaaattgattttatattt 50665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 23318474 - 23318530
Alignment:
Q  270 gaattggataataaggaaaagaaagagaaaataaattgattttatattttacaaaat 326  Q
    |||||||||| ||| || || |||||||||| |||||| ||||||||||| ||||||    
T  23318474 gaattggatactaaagagaaaaaagagaaaacaaattggttttatattttgcaaaat 23318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 50665496 - 50665554
Alignment:
Q  297 aaaataaattgattttatattttacaaaattacc---aagcacataaaattaaggtgat 352  Q
    |||| ||||||||||||||||||  |||||||||   ||| ||||||||||||||||||    
T  50665496 aaaaaaaattgattttatattttgtaaaattaccattaagtacataaaattaaggtgat 50665554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 21759 - 21672
Alignment:
Q  279 aataaggaaaagaaagagaaaataaattgattttatattttacaaaattacc---aagcacataaaattaaggtgatcataaatttaag 364  Q
    |||||||| |||||||||  || ||||||||||||||||||  ||||||| |   |||||||||||||||||||| |||| | ||||||    
T  21759 aataaggagaagaaagagttaacaaattgattttatatttt-gaaaattatcattaagcacataaaattaaggtggtcatgagtttaag 21672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University