View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_1 (Length: 940)

Name: NF4946_low_1
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_1
NF4946_low_1
[»] chr8 (5 HSPs)
chr8 (14-211)||(3781411-3781608)
chr8 (832-940)||(3781122-3781230)
chr8 (698-764)||(9824772-9824838)
chr8 (407-534)||(27289832-27289961)
chr8 (414-507)||(9825239-9825332)
[»] chr1 (2 HSPs)
chr1 (505-583)||(12685384-12685463)
chr1 (727-772)||(23808689-23808734)
[»] chr3 (3 HSPs)
chr3 (715-772)||(37743449-37743506)
chr3 (715-775)||(49723454-49723515)
chr3 (702-774)||(31179008-31179080)
[»] chr6 (1 HSPs)
chr6 (385-454)||(32317794-32317863)
[»] chr5 (1 HSPs)
chr5 (875-940)||(41593126-41593191)
[»] chr7 (1 HSPs)
chr7 (715-765)||(25821101-25821151)
[»] chr4 (1 HSPs)
chr4 (862-932)||(24551259-24551329)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 3781608 - 3781411
Alignment:
Q  14 atcaagcattgttgtatatagatccacacgctcaatatatttgtgtttggtgtgcggatataaataaatgagtagtgcaaaatcagaaatctgaaaacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3781608 atcaagcattgttgtatatagatccacacgctcaatatatttgtgtttggtgtgtggatataaataaatgagtagtgcaaaatcagaaatctgaaaacag 3781509  T
Q  114 gtggcagaatgaatcttaaacttcactctaataccatattttgaatgaatatcacaaaattaaaaagaatgatctttcatcgattaaatgtgagtgtt 211  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3781508 ttggcagaatgaatcttaaacttcactctaataccatattttgaatgaatatcacaaaattaaaaagaatgatctttcatcgattaaatgtgagtgtt 3781411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 832 - 940
Target Start/End: Complemental strand, 3781230 - 3781122
Alignment:
Q  832 acaaaaatattgtaagatatctaatgaaatatctactaacaacatataaagatagtactccaacaaatttctaaaattgttctttcttaaatttatgatc 931  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3781230 acaaaaatattgtaagatatctaatgaaatatctactaacaacatataaagatagtactccaacaaatttctaaaattgtcctttcttaaatttacgatc 3781131  T
Q  932 accttaatt 940  Q
    |||||||||    
T  3781130 accttaatt 3781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 698 - 764
Target Start/End: Complemental strand, 9824838 - 9824772
Alignment:
Q  698 ttcttgcactaatgagtttgagtctaacggaagaaattagactctcacaacctgacaaatcaatgtt 764  Q
    ||||| |||||||||| ||||||||||| |||||| ||| ||||||||||||| || ||||||||||    
T  9824838 ttcttacactaatgagcttgagtctaacagaagaagttatactctcacaacctcacgaatcaatgtt 9824772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 534
Target Start/End: Original strand, 27289832 - 27289961
Alignment:
Q  407 tcggtttgtagttaaatgaagacttatagatttatagttcatgttgcatgtttgataacaaaatttacgattttattgattatacgtatcttaaatact- 505  Q
    |||||| ||||||||||||||| ||||||| || |||||||||||||| |||||||  ||||  |    | ||||||| |||||||||||||| ||  |     
T  27289832 tcggttagtagttaaatgaagagttatagacttttagttcatgttgcaagtttgatctcaaaggtagatactttattggttatacgtatcttacattttt 27289931  T
Q  506 -ttcttcatatttctataaatatgatgtta 534  Q
     ||||||| |||||||| ||||||||||||    
T  27289932 cttcttcaaatttctatgaatatgatgtta 27289961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 507
Target Start/End: Complemental strand, 9825332 - 9825239
Alignment:
Q  414 gtagttaaatgaagacttatagatttatagttcatgttgcatgtttgataacaaaatttacgattttattgattatacgtatcttaaatacttt 507  Q
    ||||||||||||||| ||||||| || | ||| |||||||| ||||||| | |||  |  | ||||||||| |||||||||| |||||| ||||    
T  9825332 gtagttaaatgaagagttatagagttgttgtttatgttgcaagtttgatcataaatatagctattttattggttatacgtattttaaattcttt 9825239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 505 - 583
Target Start/End: Original strand, 12685384 - 12685463
Alignment:
Q  505 tttcttcatatttctataaatatgatgttagatgttgtgcatataataaaacaagttgtgtgcaacc-aaatatgcaaaa 583  Q
    ||||||||||||||||| ||||||||||||| |||||   ||||| ||||||||||| | ||||||| ||||||||||||    
T  12685384 tttcttcatatttctattaatatgatgttagttgttgaaaatatattaaaacaagttttatgcaaccaaaatatgcaaaa 12685463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 772
Target Start/End: Original strand, 23808689 - 23808734
Alignment:
Q  727 gaagaaattagactctcacaacctgacaaatcaatgttcgaactct 772  Q
    |||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  23808689 gaagaagttagactctcacaatctgacgaatcaatgttcgagctct 23808734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 715 - 772
Target Start/End: Original strand, 37743449 - 37743506
Alignment:
Q  715 ttgagtctaacggaagaaattagactctcacaacctgacaaatcaatgttcgaactct 772  Q
    |||||||||||| ||| | ||||||||||||||||| | |||||||||||||||||||    
T  37743449 ttgagtctaacgaaagcacttagactctcacaacctcataaatcaatgttcgaactct 37743506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 775
Target Start/End: Original strand, 49723454 - 49723515
Alignment:
Q  715 ttgagtctaacggaagaaattagactctcacaacctgacaaatcaat-gttcgaactctaat 775  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||||| |||| |||||||||    
T  49723454 ttgagtctaacggaaggagttagactttcacaacctgacgaatcaatggttcaaactctaat 49723515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 774
Target Start/End: Original strand, 31179008 - 31179080
Alignment:
Q  702 tgcactaatgagtttgagtctaacggaagaaattagactctcacaacctgacaaatcaatgttcgaactctaa 774  Q
    ||||| |||||| || |||||||| |||||| ||||||| |  |||||| || ||||||||||||||||||||    
T  31179008 tgcaccaatgaggttaagtctaacagaagaagttagactttatcaacctaacgaatcaatgttcgaactctaa 31179080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 32317794 - 32317863
Alignment:
Q  385 tttaaacatttttgcgcttagatcggtttgtagttaaatgaagacttatagatttatagttcatgttgca 454  Q
    ||||||||||||| || |||| |||||| ||||||||||||||| || || | ||| |||||||||||||    
T  32317794 tttaaacatttttccgtttagctcggttagtagttaaatgaagagttgtaaacttaaagttcatgttgca 32317863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 875 - 940
Target Start/End: Complemental strand, 41593191 - 41593126
Alignment:
Q  875 atataaagatagtactccaacaaatttctaaaattgttctttcttaaatttatgatcaccttaatt 940  Q
    ||||||| || ||||| ||||||||| | | |||||||| |||||||| |||||||||||||||||    
T  41593191 atataaaaattgtactacaacaaattcccataattgttcgttcttaaacttatgatcaccttaatt 41593126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 715 - 765
Target Start/End: Complemental strand, 25821151 - 25821101
Alignment:
Q  715 ttgagtctaacggaagaaattagactctcacaacctgacaaatcaatgttc 765  Q
    ||||||| |||||||||  ||||||||||||||| |||| |||||||||||    
T  25821151 ttgagtccaacggaagaggttagactctcacaacatgacgaatcaatgttc 25821101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 932
Target Start/End: Complemental strand, 24551329 - 24551259
Alignment:
Q  862 atctactaacaacatataaagatagtactccaacaaatttctaaaattgttctttcttaaatttatgatca 932  Q
    |||||||||||| ||||||| || |||||||||||||||  || |||| |  ||||||||| |||||||||    
T  24551329 atctactaacaatatataaaaattgtactccaacaaattcttataattatcatttcttaaacttatgatca 24551259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University