View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_13 (Length: 386)

Name: NF4946_low_13
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_13
NF4946_low_13
[»] chr1 (5 HSPs)
chr1 (195-373)||(41451740-41451935)
chr1 (306-340)||(4862312-4862346)
chr1 (306-348)||(34974729-34974771)
chr1 (306-347)||(31433628-31433669)
chr1 (306-347)||(46907333-46907374)
[»] chr7 (6 HSPs)
chr7 (306-347)||(7701682-7701723)
chr7 (306-347)||(46022159-46022200)
chr7 (296-336)||(44339757-44339797)
chr7 (306-345)||(20337451-20337490)
chr7 (306-339)||(32803835-32803868)
chr7 (307-347)||(20454385-20454425)
[»] chr6 (5 HSPs)
chr6 (306-347)||(16199588-16199629)
chr6 (308-347)||(30956210-30956249)
chr6 (306-339)||(26595495-26595528)
chr6 (305-342)||(30945957-30945994)
chr6 (311-347)||(34084526-34084562)
[»] chr5 (2 HSPs)
chr5 (306-347)||(17626124-17626165)
chr5 (306-347)||(22972255-22972296)
[»] chr4 (10 HSPs)
chr4 (306-347)||(33093008-33093049)
chr4 (306-347)||(38382459-38382500)
chr4 (306-347)||(47181979-47182020)
chr4 (306-347)||(48402089-48402130)
chr4 (306-347)||(52431016-52431057)
chr4 (306-347)||(27371279-27371320)
chr4 (304-341)||(33636007-33636044)
chr4 (306-347)||(34616699-34616740)
chr4 (306-347)||(56363937-56363978)
chr4 (304-336)||(54974620-54974652)
[»] chr3 (11 HSPs)
chr3 (306-347)||(21217650-21217691)
chr3 (306-347)||(23592596-23592637)
chr3 (306-347)||(23600731-23600772)
chr3 (306-347)||(37056949-37056990)
chr3 (306-347)||(44383327-44383368)
chr3 (308-347)||(11075270-11075309)
chr3 (308-347)||(52564543-52564582)
chr3 (306-339)||(6178317-6178350)
chr3 (306-347)||(11056825-11056866)
chr3 (310-347)||(25641479-25641516)
chr3 (306-347)||(35201326-35201367)
[»] chr2 (8 HSPs)
chr2 (306-347)||(3097753-3097794)
chr2 (306-347)||(30339756-30339797)
chr2 (306-347)||(41056639-41056680)
chr2 (308-347)||(9377594-9377633)
chr2 (306-347)||(13333062-13333103)
chr2 (306-339)||(25270474-25270507)
chr2 (306-339)||(32701236-32701269)
chr2 (306-346)||(42434258-42434298)
[»] chr8 (3 HSPs)
chr8 (296-336)||(20243433-20243473)
chr8 (296-336)||(20249688-20249728)
chr8 (306-344)||(2621922-2621960)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 195 - 373
Target Start/End: Complemental strand, 41451935 - 41451740
Alignment:
Q  195 agacaaggtatggtagttggatcattgattatagattttagtgattactccctccagaatggtttataagtgaaaatgagttaaattacgtagattaaga 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  41451935 agacaaggtatggtagttggatcattgattatagattttagtgattactcccttcagaatgatttataagtaaaaatgagttaaattacgtagattaaga 41451836  T
Q  295 aaagtagttga-----------------tgtgttatttgaacaaccatttatatgacaacttatgagacatccgtatatattctttagtttgatga 373  Q
    ||| |||||||                 ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  41451835 aaaatagttgatcatataatattataggtgtgttatttgaacaaccatttatatgacaacttacgagacatccatgtatattctttagtttgatga 41451740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 4862312 - 4862346
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactta 340  Q
    ||||||||||||||||| |||||||||||||||||    
T  4862312 tgtgttatttgaacaactatttatatgacaactta 4862346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 34974729 - 34974771
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagacat 348  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||    
T  34974729 tgtgttatttgaacaatcatttatgtgacaacttataagacat 34974771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 31433669 - 31433628
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  31433669 tgtgttatttgaacaactatttgtatgataacttatgagaca 31433628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 46907374 - 46907333
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| ||||||||| |||||||| |||||||    
T  46907374 tgtgttatttgaacatccatttatacgacaacttttgagaca 46907333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 7701723 - 7701682
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  7701723 tgtgttatttgaacatccatttatatgacaacttttgagaca 7701682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 46022159 - 46022200
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  46022159 tgtgttatttgaacatccatttatatgacaacttttgagaca 46022200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 44339797 - 44339757
Alignment:
Q  296 aagtagttgatgtgttatttgaacaaccatttatatgacaa 336  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  44339797 aagtggttgatgtgttatttgaacaaccatttatgtgacaa 44339757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 20337490 - 20337451
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgaga 345  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  20337490 tgtgttatttgaacaactatttgtatgacaacttatgaga 20337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 32803868 - 32803835
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactt 339  Q
    ||||||||||||||| ||||||||||||||||||    
T  32803868 tgtgttatttgaacatccatttatatgacaactt 32803835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 20454425 - 20454385
Alignment:
Q  307 gtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  20454425 gtgttatttgaacaaccatttacttaacaacttatgagaca 20454385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 16199629 - 16199588
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  16199629 tgtgttatttgaacatccatttatatgacaacttttgagaca 16199588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 30956249 - 30956210
Alignment:
Q  308 tgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  30956249 tgttatttgaacaaccatttatatgaaaacttatgggaca 30956210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 26595528 - 26595495
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactt 339  Q
    ||||||||||||||| ||||||||||||||||||    
T  26595528 tgtgttatttgaacatccatttatatgacaactt 26595495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 30945994 - 30945957
Alignment:
Q  305 atgtgttatttgaacaaccatttatatgacaacttatg 342  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  30945994 atgtgttatttgaacaaccatttgtatgaaaacttatg 30945957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 34084526 - 34084562
Alignment:
Q  311 tatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||| |||| |||||||||||||||||||    
T  34084526 tatttgaacaactatttgtatgacaacttatgagaca 34084562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 17626165 - 17626124
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  17626165 tgtgttatttgaacatccatttatatgacaacttttgagaca 17626124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 22972296 - 22972255
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||| ||||||| |||||||    
T  22972296 tgtgttatttgaacatccatttatataacaacttttgagaca 22972255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 33093008 - 33093049
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  33093008 tgtgttatttgaacaaccatttatacgataacttatgagaca 33093049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 38382500 - 38382459
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  38382500 tgtgttatttgaacatccatttatatgacaacttttgagaca 38382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 47182020 - 47181979
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  47182020 tgtgttatttgaacatccatttatatgacaacttttgagaca 47181979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 48402089 - 48402130
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  48402089 tgtgttatttgaacatccatttatatgacaacttttgagaca 48402130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 52431057 - 52431016
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  52431057 tgtgttatttgaacaaccatttgtatgacaacctatgagaca 52431016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 27371320 - 27371279
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  27371320 tgtgttatttgaacaacaatttatttgagaacttatgagaca 27371279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 33636007 - 33636044
Alignment:
Q  304 gatgtgttatttgaacaaccatttatatgacaacttat 341  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  33636007 gatgtgttatttgaacaaccatttacacgacaacttat 33636044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 34616740 - 34616699
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| | |||||||||||||||| |||||||    
T  34616740 tgtgttatttgaacatctatttatatgacaacttttgagaca 34616699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 56363937 - 56363978
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| ||||||| |||||||||| |||||||    
T  56363937 tgtgttatttgaacatccatttacatgacaacttttgagaca 56363978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 54974652 - 54974620
Alignment:
Q  304 gatgtgttatttgaacaaccatttatatgacaa 336  Q
    |||||||||||||||||| ||||||||||||||    
T  54974652 gatgtgttatttgaacaatcatttatatgacaa 54974620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 21217691 - 21217650
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  21217691 tgtgttatttgaacatccatttatatgacaacttttgagaca 21217650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 23592637 - 23592596
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  23592637 tgtgttatttgaacatccatttatatgacaacttttgagaca 23592596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 23600772 - 23600731
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  23600772 tgtgttatttgaacatccatttatatgacaacttttgagaca 23600731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 37056949 - 37056990
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  37056949 tgtgttatttgaacatccatttatatgacaacttttgagaca 37056990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 44383368 - 44383327
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  44383368 tgtgttatttgaacatccatttatatgacaacttttgagaca 44383327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 11075270 - 11075309
Alignment:
Q  308 tgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  11075270 tgttatttgaacaaccatttgtatgacaacttttgagaca 11075309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 52564543 - 52564582
Alignment:
Q  308 tgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  52564543 tgttatttgaacaaccatttctatgacaacttatgggaca 52564582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 6178317 - 6178350
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactt 339  Q
    |||||||||||||||||||||| |||||||||||    
T  6178317 tgtgttatttgaacaaccatttttatgacaactt 6178350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 11056825 - 11056866
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||||| ||| ||||||| |||||||    
T  11056825 tgtgttatttgaacaaccatttgtataacaacttttgagaca 11056866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 25641479 - 25641516
Alignment:
Q  310 ttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  25641479 ttatttgaacatccatttatatgacaacttttgagaca 25641516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 35201326 - 35201367
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| ||||||| |||||||||| |||||||    
T  35201326 tgtgttatttgaacatccatttaaatgacaacttttgagaca 35201367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 3097753 - 3097794
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  3097753 tgtgttatttgaacatccatttatatgacaacttttgagaca 3097794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 30339756 - 30339797
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  30339756 tgtgttatttgaacaaccatttaaatgagaacttatgagaca 30339797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 41056639 - 41056680
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  41056639 tgtgttatttgaacatccatttatatgacaacttttgagaca 41056680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 9377633 - 9377594
Alignment:
Q  308 tgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  9377633 tgttatttgaacaaccatttagttgacaacttatgagaca 9377594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 13333062 - 13333103
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagaca 347  Q
    ||||||||||||||| | |||||||||||||||| |||||||    
T  13333062 tgtgttatttgaacatcgatttatatgacaacttttgagaca 13333103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 25270474 - 25270507
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactt 339  Q
    ||||||||||||||| ||||||||||||||||||    
T  25270474 tgtgttatttgaacatccatttatatgacaactt 25270507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 32701269 - 32701236
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaactt 339  Q
    |||||||||||||||||||||||||||| |||||    
T  32701269 tgtgttatttgaacaaccatttatatgataactt 32701236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 42434298 - 42434258
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgagac 346  Q
    ||||||||||||||| | |||||||||||||||| ||||||    
T  42434298 tgtgttatttgaacatctatttatatgacaacttttgagac 42434258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 20243473 - 20243433
Alignment:
Q  296 aagtagttgatgtgttatttgaacaaccatttatatgacaa 336  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  20243473 aagtggttgatgtgttatttgaacaaccatttatgtgacaa 20243433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 20249688 - 20249728
Alignment:
Q  296 aagtagttgatgtgttatttgaacaaccatttatatgacaa 336  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  20249688 aagtggttgatgtgttatttgaacaaccatttatgtgacaa 20249728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 2621960 - 2621922
Alignment:
Q  306 tgtgttatttgaacaaccatttatatgacaacttatgag 344  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  2621960 tgtgttatttgaacaatcatttgtatgacaacttatgag 2621922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University