View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_14 (Length: 376)

Name: NF4946_low_14
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_14
NF4946_low_14
[»] chr3 (4 HSPs)
chr3 (11-231)||(31098436-31098658)
chr3 (294-376)||(31098724-31098806)
chr3 (57-149)||(25302346-25302438)
chr3 (164-202)||(31126848-31126886)
[»] chr8 (2 HSPs)
chr8 (81-145)||(24189424-24189487)
chr8 (157-204)||(14687389-14687436)
[»] chr2 (2 HSPs)
chr2 (81-149)||(35510548-35510616)
chr2 (11-75)||(18683462-18683526)
[»] chr1 (3 HSPs)
chr1 (166-196)||(10105266-10105296)
chr1 (165-206)||(48125732-48125773)
chr1 (166-202)||(39921942-39921978)
[»] chr4 (1 HSPs)
chr4 (68-127)||(38263158-38263218)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 31098436 - 31098658
Alignment:
Q  11 gatgaagagcgatggctttggtgaaagagaagagatagaactggagtgagtgtagacacactctgaccatgtgagtaaaatgtttagggtttgtgttcct 110  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098436 gatgaagatcgatggctttggtgaaagagaagacatagaactggagtgagtgtagacacactctgaccatgtgagtaaaatgtttagggtttgtgttcct 31098535  T
Q  111 atttttatataaaaggagtaataaagaggtataaagtaannnnnnnacattaaggacgagtttgggtatgagttcggagtggata---cgtatatcctca 207  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||  |||||||||||||||||||||||||   |||||||||| |    
T  31098536 atttttatataaaaggagtaataaagaggtataaagtaa-ttttttacattaaggacggatttgggtatgagttcggagtggatacgtcgtatatcctta 31098634  T
Q  208 atacctgtctcgaacttatgtttt 231  Q
    |||| |||||||||||||||||||    
T  31098635 atacttgtctcgaacttatgtttt 31098658  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 31098724 - 31098806
Alignment:
Q  294 ccgtcaaatcgaaatgattttggacggttaactgcggatatgatttttattgtcatgcctaatcaaaggccaacacatacaca 376  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  31098724 ccgtcaaatcggaatgattttggacggttaactgcggatataatttttgttgtcatgcctaatcaaaggccaacacatacaca 31098806  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 25302346 - 25302438
Alignment:
Q  57 tgagtgtagacacactctgaccatgtgagtaaaatgtttagggtttgtgttcctatttttatataaaaggagtaataaagaggtataaagtaa 149  Q
    ||||||||||||||||||||     ||||| ||||||||||||||||| || |||||||||||||||  |||||||| |||||||||||||||    
T  25302346 tgagtgtagacacactctgaaagcatgagtgaaatgtttagggtttgtatttctatttttatataaacagagtaatatagaggtataaagtaa 25302438  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 31126886 - 31126848
Alignment:
Q  164 ggacgagtttgggtatgagttcggagtggatacgtatat 202  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  31126886 ggacgagtttgggtatgagttcggggtggatacctatat 31126848  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 24189424 - 24189487
Alignment:
Q  81 gtgagtaaaatgtttagggtttgtgttcctatttttatataaaaggagtaataaagaggtataaa 145  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  24189424 gtgagtgaaatgtttagggtttgagttc-tatttttatataaaaggagtaataaagaggtataaa 24189487  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 14687389 - 14687436
Alignment:
Q  157 acattaaggacgagtttgggtatgagttcggagtggatacgtatatcc 204  Q
    ||||| |||||||||||||||||| |||||| |||||||| |||||||    
T  14687389 acattcaggacgagtttgggtatgggttcggggtggatacatatatcc 14687436  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 35510616 - 35510548
Alignment:
Q  81 gtgagtaaaatgtttagggtttgtgttcctatttttatataaaaggagtaataaagaggtataaagtaa 149  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| |||||||||| || |||||| ||||    
T  35510616 gtgagtgaaatgtttagggtttgggtttctatttttatataaagggagtaataatgaagtataaggtaa 35510548  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 18683462 - 18683526
Alignment:
Q  11 gatgaagagcgatggctttggtgaaagagaagagatagaactggagtgagtgtagacacactctg 75  Q
    ||||||||  ||||| | ||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  18683462 gatgaagattgatggttatggtgaaggagaatagatagaattggagtgagtgtagacacactctg 18683526  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 10105266 - 10105296
Alignment:
Q  166 acgagtttgggtatgagttcggagtggatac 196  Q
    |||||||||||||||||||||||||||||||    
T  10105266 acgagtttgggtatgagttcggagtggatac 10105296  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 48125773 - 48125732
Alignment:
Q  165 gacgagtttgggtatgagttcggagtggatacgtatatcctc 206  Q
    |||||||||||||||| |||||| |||||||| |||||||||    
T  48125773 gacgagtttgggtatgggttcggggtggatacctatatcctc 48125732  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 39921942 - 39921978
Alignment:
Q  166 acgagtttgggtatgagttcggagtggatacgtatat 202  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  39921942 acgagtttgggtatgagttcggagtgggtacatatat 39921978  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 38263218 - 38263158
Alignment:
Q  68 acactctgaccatgtgagtaaaatg-tttagggtttgtgttcctatttttatataaaagga 127  Q
    |||||||||| | |||||| ||||| |||| |||||| ||| |||||||||||||||||||    
T  38263218 acactctgactacgtgagtgaaatggtttaaggtttgagtttctatttttatataaaagga 38263158  T

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