View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946_low_19 (Length: 244)
Name: NF4946_low_19
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_low_19 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 23439601 - 23439361
Alignment:
| Q |
4 |
aatgtgataatataatacctcttttactggagaaaaataagtatgcctaaattctttggaatattttccaagatatgcttctaactttgcagtatcttct |
103 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23439601 |
aatgtgataatataatacctcttttactggagaacaataagtatgcctaaattctttggaatattttctaagatatgcttctaactttgcagtatcttct |
23439502 |
T |
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| Q |
104 |
cttcgatatatgtcccaaagtgcaccagctgtttctgatgtatcttctgtgattggtggaacttcatttggaaatagctttgctttgatctcaaaaggac |
203 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439501 |
cttcgaaatatgtcccaaagtgcactagctgtttctgatgtatcttctgtgattggtggaacttcatttggaaatagctttgctttgatctcaaaaggac |
23439402 |
T |
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| Q |
204 |
ctccattatcttcaacaagaccctctttctgaaccagttat |
244 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
23439401 |
ctccattatcttgaacaagaccctctttctgaaccagttat |
23439361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 8673293 - 8673533
Alignment:
| Q |
4 |
aatgtgataatataatacctcttttactggagaaaaataagtatgcctaaattctttggaatattttccaagatatgcttctaactttgcagtatcttct |
103 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8673293 |
aatgtgataatataatacctcttttactggagaacaacaagtatgcctaaattctttggaatattttctaagatatgcttctaactttgcagtatcttct |
8673392 |
T |
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| Q |
104 |
cttcgatatatgtcccaaagtgcaccagctgtttctgatgtatcttctgtgattggtggaacttcatttggaaatagctttgctttgatctcaaaaggac |
203 |
Q |
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||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
8673393 |
cttcggaatatgtcccaaagtgcaccagttgtttctaatgtatcttctgtgattggtggaacttcatttagaaatagctttcctttgatcttaaaaggac |
8673492 |
T |
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| Q |
204 |
ctccattatcttcaacaagaccctctttctgaaccagttat |
244 |
Q |
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| T |
8673493 |
ctccattatcttgaacaagaccctctttttgaaccagttat |
8673533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 8719587 - 8719815
Alignment:
| Q |
5 |
atgtgataatataatacctcttttactggagaaaaataagtatgcctaaattctttggaatattttccaagatatgcttctaactttgcagtatcttctc |
104 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||||| |
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| T |
8719587 |
atgtgatagtataatacctcttttactggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgtttctaactttgcagtatcttctc |
8719686 |
T |
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| Q |
105 |
ttcgatatatgtcccaaagtgcaccagctgtttctgatgtatcttctgtgattggtggaacttcatttggaaatagctttgctttgatctcaaaaggacc |
204 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
8719687 |
ttcggaatatgtcccaaagtgcaccagctgtttctgatgtatcttctgtgattgatggaacttcatttggaaatagctttccattgatctcaaaatgacc |
8719786 |
T |
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| Q |
205 |
tccattatcttcaacaagaccctctttct |
233 |
Q |
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| T |
8719787 |
tccattatcttgaacaagaccttctttct |
8719815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 8591743 - 8591895
Alignment:
| Q |
4 |
aatgtgataatataatacctcttttactggagaaaaataagtatgcctaaattctttggaatattttccaagatatgcttctaactttgcagtatcttct |
103 |
Q |
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|||| ||||||||||||||| || ||| ||||| ||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
8591743 |
aatgcgataatataataccttttctaccggagagaaaaaagtatgcctaaattctttgcaatgtttttgaagatatgcttctaactttgcagtatcttct |
8591842 |
T |
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| Q |
104 |
cttcgatatatgtcccaaagtgcaccagctgtttctgatgtatcttctgtgat |
156 |
Q |
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||| | ||||||||||||| |||||||||||||| ||| | |||| |||||| |
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| T |
8591843 |
cttttaaatatgtcccaaagagcaccagctgtttcagatatttcttttgtgat |
8591895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 55410429 - 55410510
Alignment:
| Q |
39 |
aataagtatgcctaaattctttggaatattttccaagatatgcttctaactttgcagtatcttctcttcgatatatgtccca |
120 |
Q |
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||||||||||||| |||||||| || | ||||| |||||||||| |||||||| |||| || ||||| ||| |||| ||||| |
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| T |
55410429 |
aataagtatgcctgaattctttcgagtgttttctaagatatgctcctaacttttcagtgtcctctctccgaaatatatccca |
55410510 |
T |
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