View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_2 (Length: 859)

Name: NF4946_low_2
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_2
NF4946_low_2
[»] chr5 (8 HSPs)
chr5 (18-303)||(16052724-16053008)
chr5 (656-847)||(19598759-19598947)
chr5 (334-444)||(16052533-16052643)
chr5 (504-657)||(16052321-16052471)
chr5 (200-278)||(15936391-15936469)
chr5 (675-778)||(13951464-13951564)
chr5 (18-148)||(15936233-15936363)
chr5 (611-650)||(42564264-42564303)
[»] chr3 (5 HSPs)
chr3 (656-847)||(53534854-53535042)
chr3 (20-128)||(36309075-36309183)
chr3 (656-688)||(53533654-53533686)
chr3 (83-129)||(36327440-36327486)
chr3 (83-128)||(36335970-36336015)
[»] chr1 (3 HSPs)
chr1 (656-839)||(4753423-4753603)
chr1 (683-847)||(38202442-38202604)
chr1 (656-688)||(4756677-4756709)
[»] chr8 (1 HSPs)
chr8 (656-839)||(42915883-42916063)
[»] chr7 (3 HSPs)
chr7 (659-839)||(23252770-23252947)
chr7 (656-847)||(21944680-21944868)
chr7 (656-688)||(23255547-23255579)
[»] chr4 (3 HSPs)
chr4 (660-847)||(13096248-13096431)
chr4 (656-847)||(17382381-17382568)
chr4 (651-712)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (733-847)||(41543723-41543835)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 16053008 - 16052724
Alignment:
Q  18 gataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagatcaatcatt 117  Q
    ||||| |||||||||||| ||||||||||| ||| | |||||  || | | |||||||||| ||||||| |||||||||||| ||| | |||||||||||    
T  16053008 gataaatgcccttttcttgaatctcttgaccttcaaggatgtcgttatctagaattaagtaaaagtttggagaaaaggtgcattgatccgatcaatcatt 16052909  T
Q  118 tgcaactgccaaattcttatgactttgatgactatgattactcccctagttatgaatatgactttggcggagactatgatccttggtactactgaatgtt 217  Q
    ||| ||||||||||| ||||| ||||||||||||||||||||||||   || |||||||||||||||||||||||||||| |||||||||||||||||||    
T  16052908 tgcgactgccaaatttttatgtctttgatgactatgattactcccc---ttgtgaatatgactttggcggagactatgattcttggtactactgaatgtt 16052812  T
Q  218 gtagtattggtg--atgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctctgatctcgaatgtaagc 303  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  16052811 gtagtattggtgatatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctccggtctcaaatgtaagc 16052724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 656 - 847
Target Start/End: Original strand, 19598759 - 19598947
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttc 19598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 334 - 444
Target Start/End: Complemental strand, 16052643 - 16052533
Alignment:
Q  334 atgaagtatttatcgtgatccttgatgatactcatgctactgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 433  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16052643 atgaagtatttattgtgatccttgatgatactcatgctaatgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 16052544  T
Q  434 ttaggactatc 444  Q
    |||||||||||    
T  16052543 ttaggactatc 16052533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 504 - 657
Target Start/End: Complemental strand, 16052471 - 16052321
Alignment:
Q  504 aatgaaagtctatgtgtgatttctccttggtcgtatagaaaaacgcatnnnnnnntgagataagaattaattagagtaaagtttgtagtagtatttcctt 603  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||       || |||||||||||||||||||||| |||||||||   |||||||    
T  16052471 aatgaaagtctatgtgtgatttcaccttggtcgtataggaaaacgcataaaaaaatgtgataagaattaattagagtaaaatttgtagta---tttcctt 16052375  T
Q  604 tttgcctcaattatgcagtaatcacccacttattgcttgtattagcttatacta 657  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16052374 tttgcctcaattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 15936391 - 15936469
Alignment:
Q  200 ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgt 278  Q
    ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  15936391 ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttcttgtcatgt 15936469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 778
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  675 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 774  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  775 aaca 778  Q
    ||||    
T  13951561 aaca 13951564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 15936233 - 15936363
Alignment:
Q  18 gataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagatcaatcatt 117  Q
    ||||| || ||||||||| ||||||||||| ||| | |||||  || | | ||||| |||  ||||||| | |||||||||| ||| |  ||||||||||    
T  15936233 gataaatggccttttcttgaatctcttgaccttcaaggatgtcgttatctcgaattgagtgaaagtttggaaaaaaggtgcattgatcgaatcaatcatt 15936332  T
Q  118 tgcaactgccaaattcttatgactttgatga 148  Q
    |||||||||||| |  |||||||| ||||||    
T  15936333 tgcaactgccaattcgttatgactctgatga 15936363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 650
Target Start/End: Complemental strand, 42564303 - 42564264
Alignment:
Q  611 caattatgcagtaatcacccacttattgcttgtattagct 650  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  42564303 caattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 5e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 656 - 847
Target Start/End: Complemental strand, 53535042 - 53534854
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttc 53534854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 36309183 - 36309075
Alignment:
Q  20 taagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagatcaatcatttg 119  Q
    |||||||||| | |||||||||||||||||||| |||||  ||| | | ||||| |||  |||||||||||||||||||| ||| ||||||||| |||||    
T  36309183 taagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaagaaaaggtgcattgatcagatcaatgatttg 36309084  T
Q  120 caactgcca 128  Q
    |||||||||    
T  36309083 caactgcca 36309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 688
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttg 688  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 36327486 - 36327440
Alignment:
Q  83 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa 129  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  36327486 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaa 36327440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 36336015 - 36335970
Alignment:
Q  83 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgcca 128  Q
    ||||||||||||||||| ||| ||||||||  ||||||||||||||    
T  36336015 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca 36335970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 656 - 839
Target Start/End: Original strand, 4753423 - 4753603
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 839  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattca 4753603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 683 - 847
Target Start/End: Complemental strand, 38202604 - 38202442
Alignment:
Q  683 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 781  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  782 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 38202442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 688
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttg 688  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 656 - 839
Target Start/End: Original strand, 42915883 - 42916063
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 839  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 42916063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 659 - 839
Target Start/End: Original strand, 23252770 - 23252947
Alignment:
Q  659 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 758  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  759 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 839  Q
    |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 23252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 656 - 847
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 688
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttg 688  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 660 - 847
Target Start/End: Complemental strand, 13096431 - 13096248
Alignment:
Q  660 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 759  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  760 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttc 13096248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 656 - 847
Target Start/End: Complemental strand, 17382568 - 17382381
Alignment:
Q  656 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 755  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  756 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 847  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 17382381  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 712
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  651 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 712  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

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Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 733 - 847
Target Start/End: Original strand, 41543723 - 41543835
Alignment:
Q  733 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 832  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  833 gaattcacatggttc 847  Q
    ||||||||| |||||    
T  41543821 gaattcacacggttc 41543835  T

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