View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946_low_24 (Length: 237)
Name: NF4946_low_24
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 39047560 - 39047336
Alignment:
| Q |
4 |
gtattgaattacttccaattccaaacaatgataaatttgcaagataaaacaataacnnnnnnnnaacgaagataaacaaataatattgaagttgtttgtc |
103 |
Q |
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| T |
39047560 |
gtattgaattacttccatttccaaataatgataaatttgcaagataaaacaataa-atttttttaaggaagataaacaaataatattgaagttgtttgtt |
39047462 |
T |
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| Q |
104 |
cacatattgttaattattggaagaaaaaattcaatgtaaactaattttataataacattcaacaaaagtatggtatttgatttnnnnnnnnnncggatac |
203 |
Q |
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| T |
39047461 |
cacatattgttaattatttgaagaaaaaattcaatgtaaactaattttataataacattcaacaaaagtatggtatttgatttaaaaataaat-ggatac |
39047363 |
T |
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| Q |
204 |
gaaatatgtctatatagcatgatgatg |
230 |
Q |
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| T |
39047362 |
gaaatatgtctatatagcatgatgatg |
39047336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 39049878 - 39049696
Alignment:
| Q |
4 |
gtattgaattacttccaattccaaacaatgataaatttgcaagataaaacaataacnnnnnnnnaacgaagataaacaaataatattgaagttgtttgtc |
103 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || |
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| T |
39049878 |
gtattgaattacttccatttccaaataatgataaatttgcaagataaaacaataa--tttttttaacgaagataaacaaataatattgaagttattggtt |
39049781 |
T |
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| Q |
104 |
cacatattgttaattattggaagaaaaaa--ttcaatgtaaactaattttataataacattcaacaaaagtatggtatttgattt |
186 |
Q |
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| T |
39049780 |
cacgtatttttaattattggaagaaaaaaaattcaatgtaaactaattttataataacattcaacaaaagtatggtatttgattt |
39049696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 39049679 - 39049648
Alignment:
| Q |
199 |
gatacgaaatatgtctatatagcatgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39049679 |
gatacgaaatatgtctatatagcatgatgatg |
39049648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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