View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_25 (Length: 235)

Name: NF4946_low_25
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_25
NF4946_low_25
[»] chr1 (6 HSPs)
chr1 (40-229)||(39048299-39048488)
chr1 (70-199)||(31088731-31088862)
chr1 (68-229)||(43387012-43387173)
chr1 (62-229)||(31089455-31089623)
chr1 (76-229)||(7844532-7844684)
chr1 (62-197)||(16852891-16853026)
[»] chr6 (7 HSPs)
chr6 (62-229)||(18089905-18090072)
chr6 (76-193)||(26595896-26596013)
chr6 (68-174)||(1599695-1599801)
chr6 (127-196)||(11554336-11554405)
chr6 (70-170)||(15600268-15600368)
chr6 (127-173)||(4852873-4852919)
chr6 (68-229)||(34515061-34515223)
[»] scaffold0061 (2 HSPs)
scaffold0061 (62-229)||(44843-45010)
scaffold0061 (127-229)||(45568-45670)
[»] scaffold0021 (1 HSPs)
scaffold0021 (70-229)||(127521-127679)
[»] scaffold0017 (2 HSPs)
scaffold0017 (62-229)||(153777-153944)
scaffold0017 (127-229)||(153117-153219)
[»] chr5 (10 HSPs)
chr5 (68-229)||(38015845-38016006)
chr5 (68-106)||(11499326-11499364)
chr5 (68-106)||(11506682-11506720)
chr5 (68-106)||(11514076-11514114)
chr5 (68-106)||(11521452-11521490)
chr5 (68-106)||(11528860-11528898)
chr5 (68-106)||(11536292-11536330)
chr5 (68-106)||(11542387-11542425)
chr5 (68-106)||(11572583-11572621)
chr5 (65-165)||(19905542-19905642)
[»] chr2 (12 HSPs)
chr2 (68-221)||(36720079-36720232)
chr2 (76-229)||(38796806-38796959)
chr2 (118-204)||(3395390-3395476)
chr2 (68-166)||(29977336-29977434)
chr2 (179-229)||(6909758-6909808)
chr2 (67-165)||(36727610-36727708)
chr2 (130-196)||(41752926-41752992)
chr2 (106-196)||(45054021-45054111)
chr2 (68-204)||(5788811-5788945)
chr2 (62-199)||(14872722-14872859)
chr2 (71-144)||(25546954-25547027)
chr2 (127-172)||(45661167-45661212)
[»] chr4 (9 HSPs)
chr4 (106-229)||(13909834-13909957)
chr4 (60-219)||(42727846-42728005)
chr4 (151-225)||(22681136-22681210)
chr4 (62-199)||(24182443-24182580)
chr4 (68-229)||(42756734-42756895)
chr4 (68-229)||(13228705-13228865)
chr4 (62-229)||(28474804-28474972)
chr4 (83-199)||(35648520-35648636)
chr4 (115-205)||(42729411-42729500)
[»] scaffold0284 (1 HSPs)
scaffold0284 (62-164)||(6405-6507)
[»] chr8 (12 HSPs)
chr8 (68-174)||(42797253-42797359)
chr8 (121-229)||(45528252-45528360)
chr8 (151-229)||(19263271-19263349)
chr8 (62-199)||(15276763-15276900)
chr8 (62-199)||(15457132-15457269)
chr8 (76-196)||(43216905-43217023)
chr8 (63-174)||(13756544-13756655)
chr8 (99-174)||(23141763-23141838)
chr8 (127-196)||(13758959-13759028)
chr8 (121-197)||(38291830-38291906)
chr8 (122-206)||(10279122-10279206)
chr8 (130-174)||(23140578-23140622)
[»] chr3 (11 HSPs)
chr3 (68-174)||(50331926-50332032)
chr3 (83-199)||(20934184-20934300)
chr3 (151-229)||(50444-50522)
chr3 (70-165)||(10974955-10975050)
chr3 (89-199)||(6436872-6436982)
chr3 (62-172)||(9611703-9611813)
chr3 (68-197)||(9262776-9262905)
chr3 (122-223)||(17764187-17764288)
chr3 (122-223)||(19065507-19065608)
chr3 (68-165)||(25225304-25225401)
chr3 (76-229)||(39183076-39183228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (118-228)||(47073-47183)
[»] scaffold1743 (1 HSPs)
scaffold1743 (154-229)||(155-230)
[»] scaffold0191 (2 HSPs)
scaffold0191 (106-172)||(12229-12295)
scaffold0191 (62-229)||(5918-6086)
[»] chr7 (3 HSPs)
chr7 (76-173)||(2929449-2929546)
chr7 (121-196)||(6190580-6190655)
chr7 (127-172)||(6202389-6202434)
[»] scaffold1312 (1 HSPs)
scaffold1312 (83-199)||(12-128)
[»] scaffold1782 (1 HSPs)
scaffold1782 (121-199)||(1285-1363)
[»] scaffold1315 (1 HSPs)
scaffold1315 (127-229)||(1324-1426)
[»] scaffold1293 (1 HSPs)
scaffold1293 (127-229)||(645-747)
[»] scaffold1005 (1 HSPs)
scaffold1005 (68-106)||(4-42)
[»] scaffold0169 (1 HSPs)
scaffold0169 (127-229)||(5185-5286)
[»] scaffold0159 (1 HSPs)
scaffold0159 (68-204)||(33184-33318)
[»] scaffold1933 (1 HSPs)
scaffold1933 (127-171)||(552-596)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 39048299 - 39048488
Alignment:
Q  40 gctgaaagtttttgacttatgtgagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtga 139  Q
    ||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39048299 gctgagagtttctgacttatgggagatgtgttaatttgtcaattgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtga 39048398  T
Q  140 gatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
     ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  39048399 aatgaccaatctacataatgtcttaagattttgggagatgatatggcgtcaatctcacttttttggtcgctcttagtctaatgtgatgat 39048488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 31088862 - 31088731
Alignment:
Q  70 ttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatatt--agtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||| |||||||||| |||| |||||| | |||| | ||  |||||||||||||||   |||||||||| |||| ||||||||| ||||| |    
T  31088862 ttaatttatcaattgtgacttaacgttccacattggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaata 31088763  T
Q  168 ttttgggagatgatgtggcgtcaatctcactt 199  Q
    ||||||  |||| |||| ||||||||||||||    
T  31088762 ttttggatgatggtgtgacgtcaatctcactt 31088731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 43387173 - 43387012
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| ||  |||||||| |||| | || |||||||||||||||| ||||| |||||   | || ||||||||||||||    
T  43387173 tgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaaga 43387074  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||| || | ||||  |||||||| |||| |||| | ||| |||  ||||||| |||||    
T  43387073 ttttgggtgaagttgtgatgtcaatcttacttgtgtgcttgcttttaacctaatgttatgat 43387012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 31089623 - 31089455
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||| | | || | || || ||||| ||||||| || ||||||| |||| |||||||||||    
T  31089623 gagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgatcaatatacctaatgtc 31089524  T
Q  162 ttaagattttg-ggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    | ||| ||||  || || ||||||| ||||||||||||| || |||  ||||||||  |||||||||||    
T  31089523 tgaagtttttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttagtaaaatgtgatgat 31089455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 7844684 - 7844532
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggga 175  Q
    |||||| ||||| |||||||||||||||| | |||| |||| |||||||  ||||||| ||||| || ||| || ||  ||||| |||||| ||| | |     
T  7844684 tgtcaattgtgatttaaagttctacattggatgcaataatagatgttgaacaacatataagtgatataacccatata-ttaatgacttaaggtttagagt 7844586  T
Q  176 gatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    || ||||||| ||||| ||||||| ||||||  || ||| ||||| ||||||||    
T  7844585 gaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaacgtgatgat 7844532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 16852891 - 16853026
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||| | |||||| || || |||||||||||    |||||||||| ||| ||| ||||||     
T  16852891 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 16852990  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcac 197  Q
    ||||| ||||  | || ||||||| |||||||||||    
T  16852991 ttaaggttttaagggaagatgtggtgtcaatctcac 16853026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 18090072 - 18089905
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||| ||| ||||||||||||| |||    | || | || ||||| |||||||||| | |||||||| |||| ||||||||| |    
T  18090072 gagatatgttaatatgtcaattgtcacttaaagttctatattccttgaaagagtagatgttcagaaacatataattgagatgaacaatatacctaatgcc 18089973  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||| ||||||| || ||||||| ||||||||||| | ||| || |||||||||||||| |||||||    
T  18089972 ttaaggttttgggtgaagatgtggtgtcaatctcacctctgtagttgctcttagtctaatatgatgat 18089905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 26596013 - 26595896
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggga 175  Q
    |||||| |||||||||||||||||||||| | |  ||| || ||||| |||||||||| ||| |||||||||||  ||||||||||||||| ||||||      
T  26596013 tgtcaattgtgacttaaagttctacattggatgtcaaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggat 26595914  T
Q  176 gatgatgtggcgtcaatc 193  Q
    |||||||||  |||||||    
T  26595913 gatgatgtgatgtcaatc 26595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 1599695 - 1599801
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||||||||||| |||||||||||  || || ||||||||||||||    
T  1599695 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaaga 1599794  T
Q  168 ttttggg 174  Q
    |||||||    
T  1599795 ttttggg 1599801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 11554405 - 11554336
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctca 196  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||  |  |||||| ||||||||||    
T  11554405 aacatattagtgagatgacccatgtacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctca 11554336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 15600368 - 15600268
Alignment:
Q  70 ttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagatt 169  Q
    ||||| ||| || ||||| | ||||||| |||||||| |||| | |  |||||||| |||||| || ||| ||||||||| |||||||||||||||||||    
T  15600368 ttaatgtgttaaatgtgagtaaaagttcgacattgaaagcaacagttgatgttgagcaacataataatgatatgaccaatatacctaatgtcttaagatt 15600269  T
Q  170 t 170  Q
    |    
T  15600268 t 15600268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 4852873 - 4852919
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgg 173  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||    
T  4852873 aacatattagtgagatgacccatgtaccgaatgtcttaagattttgg 4852919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 34515223 - 34515061
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc-ttaag 166  Q
    ||||||| |||||  ||| | ||||| |||||||||||| |||||| || || |||||||||||    |||||||||||||| ||| ||||||| || ||    
T  34515223 tgttaatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcag 34515124  T
Q  167 attttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
     ||||| | || ||||||  |||||||||| ||||| |||  ||||| ||| |||||| ||||    
T  34515123 gttttgagtgaagatgtgatgtcaatctcatttttggggtttctcttggtcaaatgtggtgat 34515061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 45010 - 44843
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||| ||| ||||||||||||| |||    | || | || ||||||||||| |||| |||||||||| |||| ||||||||| |    
T  45010 gagatatgttaatatgtcaattgtcacttaaagttctatatttgttgaaagagtagatgttgagaaatatataagtgagatgaacaatatacctaatgcc 44911  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||| | |||| || || ||||||| ||||||||||  | ||| || |||||||||||||| |||||||    
T  44910 ttatggtttttggtgaagatgtggtgtcaatctcaaatatgtagttgctcttagtctaatatgatgat 44843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 45670 - 45568
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgat 226  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||| || ||| ||| ||  ||||||||| || |||  |||||| || ||||||||    
T  45670 aacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgtgat 45571  T
Q  227 gat 229  Q
    |||    
T  45570 gat 45568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 127679 - 127521
Alignment:
Q  70 ttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagatt 169  Q
    ||||| |||||| |||||||||||||||||||||| | |  ||| || ||||| |||||||||| ||| |||||||||||  ||||||||||||||| |     
T  127679 ttaatgtgtcaattgtgacttaaagttctacattggatgataaagtagatgtttagaaacatataagtaagatgaccaatacacctaatgtcttaaggtc 127580  T
Q  170 ttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    |||   |||||||||  ||||||| || || |||||| |||||||  ||||||| |||||    
T  127579 ttgaatgatgatgtgatgtcaatcacaattgtgtggt-gctcttaacctaatgtcatgat 127521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 153777 - 153944
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||| ||| ||||||||||||| |||    | || | || ||||||||||| |||| |||||||||| |||| ||||||||| |    
T  153777 gagatatgttaatatgtcaattgtcacttaaagttctatatttgttgaaagagtagatgttgagaaatatataagtgagatgaacaatatacctaatgcc 153876  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||| | |||| || || ||||||| ||||||||||  | ||| || |||||||||||||| |||||||    
T  153877 ttatggtttttggtgaagatgtggtgtcaatctcaaatatgtagttgctcttagtctaatatgatgat 153944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 153117 - 153219
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgat 226  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||| || ||| ||| ||  ||||||||| || |||  |||||| || ||||||||    
T  153117 aacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgtgat 153216  T
Q  227 gat 229  Q
    |||    
T  153217 gat 153219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 38016006 - 38015845
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||| ||||||| |||||||||||  || || |||||| |||||||    
T  38016006 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaaga 38015907  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||| || | ||||  ||||||||||||| |||| | ||| |||| ||||||| |||||    
T  38015906 ttttgggtgaagttgtgatgtcaatctcacttgtgtgcttgcttttagcctaatgttatgat 38015845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11499364 - 11499326
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11499364 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11499326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11506720 - 11506682
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11506720 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11514114 - 11514076
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11514114 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11514076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11521490 - 11521452
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11521490 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11521452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11528898 - 11528860
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11528898 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11528860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11536330 - 11536292
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11536330 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11536292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11542425 - 11542387
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11542425 tgttaatttgtcaagtgtgacttaacgttctacattgaa 11542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11572621 - 11572583
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11572621 tgttaatttgtcaagtgtgacttaatgttctacattgaa 11572583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 19905642 - 19905542
Alignment:
Q  65 atgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtctta 164  Q
    |||| |||||||||||| ||||||||||| ||  | ||| || ||| || ||  |||||||||||||||   | |||||| |||| ||||||||||||||    
T  19905642 atgtattaatttgtcaattgtgacttaaaatttcatattaaatgcataagtaggtgttgagaaacatatatataagatgatcaatatacctaatgtctta 19905543  T
Q  165 a 165  Q
    |    
T  19905542 a 19905542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 36720079 - 36720232
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| ||||||| ||   |||| |||| |||||||| ||||||| |||||||||| | || |||||||||||| ||||    
T  36720079 tgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtctgaaga 36720178  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaat 221  Q
     |||||| || ||||||  |||||||| | || ||| || |||||||| |||||    
T  36720179 ctttgggtgaagatgtgatgtcaatctaatttgtgtagttgctcttagactaat 36720232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 38796806 - 38796959
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggga 175  Q
    |||||||||||||||||| ||  | |||| | | || | || |||||||||||||||| ||||| ||||| ||| |  |||||| ||||||||||||  |    
T  38796806 tgtcaactgtgacttaaaatttcatattggatgaaagagtatatgttgagaaacatataagtgaaatgactaatatgtctaatgccttaagattttgaaa 38796905  T
Q  176 gatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    || ||||||| |||||  ||| || |||||| ||||||||  ||||||||||||    
T  38796906 gaagatgtggtgtcaacatcaattgtgtggttgctcttagcataatgtgatgat 38796959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 3395476 - 3395390
Alignment:
Q  118 atgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtg 204  Q
    |||||||||||||||| |||||||||||  || || ||||||||||||||||||||| || | ||||  |||||||| |||| ||||    
T  3395476 atgttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgtgtg 3395390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 29977434 - 29977336
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaag 166  Q
    ||||||| |||||| ||| | ||||||||| |||||||| |||| | |  ||||||| |||||||| ||||| |||||  || ||||||||||||||||    
T  29977434 tgttaatgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgatatgactcatatacctaatgtcttaag 29977336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 6909758 - 6909808
Alignment:
Q  179 gatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||| ||||||||||||||||||||   | ||||||||||||||||||    
T  6909758 gatgtggtgtcaatctcacttttgtggtatttgttagtctaatgtgatgat 6909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 36727708 - 36727610
Alignment:
Q  67 gtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaa 165  Q
    |||||||| |||||| ||||||||||| ||  |||||  | |||||| || ||||| ||||||||||  |||||||||| ||| || ||||||| ||||    
T  36727708 gtgttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatatatgtgagatgactaatatagctaatgtgttaa 36727610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 41752992 - 41752926
Alignment:
Q  130 atattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctca 196  Q
    |||||||||||||| || || |||||||||||||||| |||||||  |  |||||| ||||||||||    
T  41752992 atattagtgagatggcccatatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctca 41752926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 45054111 - 45054021
Alignment:
Q  106 acgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctca 196  Q
    |||||||| || || ||||| ||||||| ||||||||   |||| ||||| ||||||||||||||||   || ||||||| ||||||||||    
T  45054111 acgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaatctca 45054021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 5788945 - 5788811
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||  ||||||| |||||||||||  || |  ||||||||||||||    
T  5788945 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactcatat--ctaatgtcttaaga 5788848  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtg 204  Q
    ||||||| || | ||||  |||||||| |||| ||||    
T  5788847 ttttgggtgaagttgtgatgtcaatcttacttgtgtg 5788811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 14872722 - 14872859
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||| | |||||| || || |||||||||||    |||||||||| ||| ||| ||||||     
T  14872722 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 14872821  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcactt 199  Q
    |||||   || || || ||||||| |||||||||||||    
T  14872822 ttaaggagttaggtgaagatgtggtgtcaatctcactt 14872859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 25546954 - 25547027
Alignment:
Q  71 taatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatga 144  Q
    |||| |||||| ||||| |||||||||||||||| | |||| || | ||||||| |||||||| ||||| ||||    
T  25546954 taatgtgtcaaatgtgagttaaagttctacattggatgcaagaacatatgttgaaaaacatataagtgatatga 25547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 45661167 - 45661212
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttg 172  Q
    ||||||| ||||||||| ||||| ||| ||||||||||||||||||    
T  45661167 aacatataagtgagatgtccaatatacttaatgtcttaagattttg 45661212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 13909834 - 13909957
Alignment:
Q  106 acgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtgg 205  Q
    ||||||||||| || ||||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||   || ||||||| |||||||||| || || ||    
T  13909834 acgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaatctcatttgtgggg 13909933  T
Q  206 tcgctcttagtctaatgtgatgat 229  Q
    |  ||||||| | ||||| |||||    
T  13909934 tttctcttagacaaatgtaatgat 13909957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 42728005 - 42727846
Alignment:
Q  60 gtgagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatg 159  Q
    ||||||| ||||||| |||||| ||| |||||||||| ||||||  | |||| | || ||||| | |||  ||| |||||| |||| ||| |||||||||    
T  42728005 gtgagatatgttaatgtgtcaattgttacttaaagttttacatttgatgcaagagtagatgttcataaatgtataagtgaggtgactaatatacctaatg 42727906  T
Q  160 tcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtcta 219  Q
    |||||  |||||||  |||||||     |||||||||||| |||||| ||||||||||||    
T  42727905 tcttactattttggatgatgatgcaatttcaatctcacttgtgtggttgctcttagtcta 42727846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 22681210 - 22681136
Alignment:
Q  151 tacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtga 225  Q
    |||||||||||||||| ||| ||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||    
T  22681210 tacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtga 22681136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 24182580 - 24182443
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||||| |||||| || || |||||||||||    |||||||||| ||| ||| ||||||     
T  24182580 gagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 24182481  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcactt 199  Q
    ||||| |||  || || ||||||| |||||||||||||    
T  24182480 ttaaggtttcaggtgaagatgtggtgtcaatctcactt 24182443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 42756895 - 42756734
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||  ||||| | ||| |||||||||| | |||| | || || ||||| ||||||| ||| | ||||| ||| ||||||| ||||||||     
T  42756895 tgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagttaaatgacaaatatacctaaagtcttaagg 42756796  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||  || ||||||| ||||||||||||| || |||  |||| || | |||||||||||    
T  42756795 ttttggatgaagatgtggtgtcaatctcacttatggggtttctctaagccaaatgtgatgat 42756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 13228705 - 13228865
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||||||||||| |||||||||||  || || ||||| |||||| |    
T  13228705 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat-tcttaaaa 13228803  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||| || | ||||  |||||||| |||| |||| | ||| |||  ||||||| |||||    
T  13228804 ttttgggtgaagttgtgatgtcaatcttacttgtgtgtttgcttttaacctaatgttatgat 13228865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 28474972 - 28474804
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| |||| || |||||  ||||| ||||| |||||||||||| |||||| || || |||||| ||||    |||||||| | ||| ||| |||||||    
T  28474972 gagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagatacatgaatgtgagatggctaatatacataatgtc 28474873  T
Q  162 tta-agattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||  || ||||| | || ||||||| |||||||||| ||||| |||  ||||| ||| |||||||||||    
T  28474872 tttcaggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatgtgatgat 28474804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 35648636 - 35648520
Alignment:
Q  83 tgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatg 182  Q
    ||||| ||||| |||||||||| | |||| | || || ||||| ||||||| || |||| || |||| ||||||||| |||||||||||  |  | ||||    
T  35648636 tgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtaaagatg 35648537  T
Q  183 tggcgtcaatctcactt 199  Q
    ||| |||||||||||||    
T  35648536 tggtgtcaatctcactt 35648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 42729500 - 42729411
Alignment:
Q  115 tacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtgg 205  Q
    ||||||||||||||||||| |||||||||||  || |||||| ||| |||||| ||  || || ||||||  ||||||||||||| |||||    
T  42729500 tacatgttgagaaacatataagtgagatgactcatatacctactgt-ttaagacttccggtgaagatgtgttgtcaatctcacttgtgtgg 42729411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 6507 - 6405
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    |||| |||||||| | |||| ||||| ||||||||| | |||| | ||||||||| |||||||  ||||||| ||||||||||||||| ||||||||| |    
T  6507 gagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaacatataagtgagatgaccaatatacctaatgac 6408  T
Q  162 tta 164  Q
    |||    
T  6407 tta 6405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 42797359 - 42797253
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||||||||||| |||||||||||  || || ||||||||||||||    
T  42797359 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaaga 42797260  T
Q  168 ttttggg 174  Q
    |||||||    
T  42797259 ttttggg 42797253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 45528252 - 45528360
Alignment:
Q  121 ttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaa 220  Q
    ||||| ||||||| | ||||||||| ||| |||||||||||||||||||||||| || ||| ||| ||  ||||||||| || |||  |||||| || ||    
T  45528252 ttgagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtgtatctcacttgtggggtttctcttaatcaaa 45528351  T
Q  221 tgtgatgat 229  Q
    |||||||||    
T  45528352 tgtgatgat 45528360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 19263349 - 19263271
Alignment:
Q  151 tacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    |||||||||||||||| ||| ||  |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||    
T  19263349 tacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgat 19263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 15276900 - 15276763
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||| | |||||| || || |||||||||||    |||||||||| ||| ||| ||||||     
T  15276900 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15276801  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcactt 199  Q
    ||||| |||| || || ||||||| |||||||||||||    
T  15276800 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 15457269 - 15457132
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||| ||||||| |||||  ||| | ||||| |||||||||| | |||||| || || |||||||||||    |||||||||| ||| ||| ||||||     
T  15457269 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15457170  T
Q  162 ttaagattttgggagatgatgtggcgtcaatctcactt 199  Q
    ||||| |||| || || ||||||| |||||||||||||    
T  15457169 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 43217023 - 43216905
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggga 175  Q
    |||||| ||||||| ||||||||| |||| | ||||   || || |||| |||||||| |||||||||| |||| ||| |||||  |||||||||||||     
T  43217023 tgtcaattgtgactcaaagttctaaattggatgcaag--tagatcttgaaaaacatataagtgagatgatcaatatacataatgctttaagattttgggt 43216926  T
Q  176 gatgatgtggcgtcaatctca 196  Q
    |||||||||| | ||||||||    
T  43216925 gatgatgtggtgacaatctca 43216905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 13756544 - 13756655
Alignment:
Q  63 agatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtct 162  Q
    |||| ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||||||||| | ||||| |||||  || || |||||||||    
T  13756544 agatatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtct 13756643  T
Q  163 taagattttggg 174  Q
    ||||||||||||    
T  13756644 taagattttggg 13756655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 23141838 - 23141763
Alignment:
Q  99 acattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggg 174  Q
    |||||||| |||| | || |||||||||||||||| | |||||||||  || || |||||||||||||||||||||    
T  23141838 acattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttggg 23141763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 13758959 - 13759028
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctca 196  Q
    ||||||||||||||||||||  | |||||||||||||||| |||||||  |  |||||| ||||||||||    
T  13758959 aacatattagtgagatgacccgtatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctca 13759028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 38291830 - 38291906
Alignment:
Q  121 ttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcac 197  Q
    ||||||||||||| ||||| || | |||| |||||||||||||||| ||||||  || ||||| | |||||||||||    
T  38291830 ttgagaaacatataagtgaaattatcaatatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 10279122 - 10279206
Alignment:
Q  122 tgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggt 206  Q
    |||||||  ||| |||||||||| | || ||||||||||  |||| |||||||  | |||||| | |||||||||||||||||||    
T  10279122 tgagaaaattataagtgagatgatccatatacctaatgttgtaaggttttgggttaagatgtgacatcaatctcacttttgtggt 10279206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 23140622 - 23140578
Alignment:
Q  130 atattagtgagatgaccaatctacctaatgtcttaagattttggg 174  Q
    |||||||||||||| || || |||||||||||||||| |||||||    
T  23140622 atattagtgagatggcctatatacctaatgtcttaaggttttggg 23140578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 50332032 - 50331926
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||||||||||| |||||||||||  || || ||||||||||||||    
T  50332032 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaaga 50331933  T
Q  168 ttttggg 174  Q
    |||||||    
T  50331932 ttttggg 50331926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 20934300 - 20934184
Alignment:
Q  83 tgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatg 182  Q
    ||||||||||| |||||||||| | |||| |||| || ||||| ||||||| || |||| || |||| ||||||||| |||||||||||  | ||  |||    
T  20934300 tgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtgaatatg 20934201  T
Q  183 tggcgtcaatctcactt 199  Q
    ||| |||||||||||||    
T  20934200 tggtgtcaatctcactt 20934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 50444 - 50522
Alignment:
Q  151 tacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    |||||||||||||||| ||| ||  |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||    
T  50444 tacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgat 50522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 10975050 - 10974955
Alignment:
Q  70 ttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaa 165  Q
    ||||| |||||| ||| |||||||||||||||||| | |  ||| || ||||| |||||||||| ||| |||||||||||  || |||||||||||    
T  10975050 ttaatgtgtcaattgtaacttaaagttctacattggatgacaaagtagatgtttagaaacatataagtaagatgaccaatacacttaatgtcttaa 10974955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 6436872 - 6436982
Alignment:
Q  89 ttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgt 188  Q
    ||||| |||||||||| | |||||| || || |||||||||||    |||||||||| ||| ||| |||||| ||||| | || || || ||||||||||    
T  6436872 ttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggtgttaggtgaagatgtggcgt 6436971  T
Q  189 caatctcactt 199  Q
    |||||||||||    
T  6436972 caatctcactt 6436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 9611813 - 9611703
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtc 161  Q
    ||||||||||||| |||||  ||||| ||||| |||||| ||| | |||| | || || || || || || ||||||||||||||  | |||||||||||    
T  9611813 gagatgtgttaatgtgtcatgtgtgatttaaacttctacgttggatgcaatagtagattttaagcaaaatgttagtgagatgacccgtatacctaatgtc 9611714  T
Q  162 ttaagattttg 172  Q
    ||||| |||||    
T  9611713 ttaaggttttg 9611703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 9262776 - 9262905
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||  ||| | ||||| |||||||||| | ||||||||| || |||||||||||    |||||||||| ||| ||| |||||| |||||     
T  9262776 tgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaatatacataatgtattaagg 9262875  T
Q  168 ttttgggagatgatgtggcgtcaatctcac 197  Q
    |||| || || ||||||   ||||||||||    
T  9262876 ttttaggtgaagatgtgctctcaatctcac 9262905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 17764187 - 17764288
Alignment:
Q  122 tgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaat 221  Q
    |||| ||||||| |||||||| ||  || ||| |||||  |||||| ||||  ||| |||||| ||| ||||||||||||||| |  |||||||||||||    
T  17764187 tgagcaacatataagtgagattactcatatacataatgctttaagactttgaaagaagatgtgacgtgaatctcacttttgtgatttctcttagtctaat 17764286  T
Q  222 gt 223  Q
    ||    
T  17764287 gt 17764288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 19065507 - 19065608
Alignment:
Q  122 tgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaat 221  Q
    |||| ||||||| |||||||| ||  || ||| |||||  |||||| ||||  ||| |||||| ||| ||||||||||||||| |  |||||||||||||    
T  19065507 tgagcaacatataagtgagattactcatatacataatgctttaagactttgaaagaagatgtgacgtgaatctcacttttgtgatttctcttagtctaat 19065606  T
Q  222 gt 223  Q
    ||    
T  19065607 gt 19065608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 25225401 - 25225304
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaa 165  Q
    ||||||| |||||  ||||| ||||||||| |||||||| |||| | || ||| ||| ||| |||  |||| ||||||| || |||||||||||||||    
T  25225401 tgttaatatgtcatttgtgagttaaagttccacattgaatgcaatagtagatggtgaaaaagatacaagtgtgatgacccatatacctaatgtcttaa 25225304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 39183076 - 39183228
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttggga 175  Q
    |||||| ||||| ||||||||||| |||| | |||| |||| |||||||  ||||||| ||||| || ||| || ||  ||||| |||||| ||| |||     
T  39183076 tgtcaagtgtgatttaaagttctatattggatgcaataatagatgttgaacaacatataagtgatataacccatata-ttaatgacttaaggtttagggt 39183174  T
Q  176 gatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    || ||||||| | ||| ||||||| ||||||  || ||| ||||| ||||||||    
T  39183175 gaagatgtggtgccaaactcacttgtgtggtttcttttaatctaacgtgatgat 39183228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 47183 - 47073
Alignment:
Q  118 atgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtc 217  Q
    |||||||  ||||||| |||||||||||  |  ||||| ||||||||||| |||||| || ||||||| ||||||| | | | |||||| |||||||| |    
T  47183 atgttgaacaacatataagtgagatgacacacatacctcatgtcttaagactttgggtgaagatgtggtgtcaatcgcgcatgtgtggttgctcttaggc 47084  T
Q  218 taatgtgatga 228  Q
    |||||||||||    
T  47083 taatgtgatga 47073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 230 - 155
Alignment:
Q  154 ctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
    ||||||||||||| ||| ||  |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||    
T  230 ctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgat 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 12229 - 12295
Alignment:
Q  106 acgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttg 172  Q
    |||||||| || || ||||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  12229 acgcaaaagtagatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattttg 12295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 5918 - 6086
Alignment:
Q  62 gagatgtgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatg-t 160  Q
    ||||| |||| || |||||  ||||| ||||| |||||||||||| |||||| || || |||||||||||    |||||||| ||||| ||| |||||      
T  5918 gagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatggccaatatacataatgaa 6017  T
Q  161 cttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgatgat 229  Q
     || |||||||| | || ||||||| |||||||| | ||||| |||  ||||| ||| ||||| |||||    
T  6018 tttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat 6086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 2929449 - 2929546
Alignment:
Q  76 tgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgg 173  Q
    |||||| ||||||||||||||| |||||  | | |||| || ||||| ||||||||||  |||||||||||||  |||||||| | |||| |||||||    
T  2929449 tgtcaattgtgacttaaagttccacattagatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaatatgttaaaattttgg 2929546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 6190580 - 6190655
Alignment:
Q  121 ttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctca 196  Q
    |||| |||||||| |||| ||| | |||| ||| |||||  ||||||||||||| |||||||||| ||||||||||    
T  6190580 ttgaaaaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaatctca 6190655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 6202389 - 6202434
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttg 172  Q
    ||||||| ||||||||| ||||| ||| ||||||||||||||||||    
T  6202389 aacatataagtgagatgtccaatatacttaatgtcttaagattttg 6202434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 12 - 128
Alignment:
Q  83 tgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatg 182  Q
    ||||| ||||| |||||||||| | |||| | || || ||||| ||||||| || |||| || |||| ||||||||| |||||||||||  |  | ||||    
T  12 tgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtaaagatg 111  T
Q  183 tggcgtcaatctcactt 199  Q
    ||| |||||||||||||    
T  112 tggtgtcaatctcactt 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1782 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 1285 - 1363
Alignment:
Q  121 ttgagaaacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcactt 199  Q
    ||||| ||||||| || |||| || |||| ||||||||| |||||||||||  | || ||||||| |||||||||||||    
T  1285 ttgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtgaagatgtggtgtcaatctcactt 1363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 1324 - 1426
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgat 226  Q
    ||||||| ||| | ||||| ||| || |||| |||||||| ||||||  || ||||||| ||||||||||||| || |||  ||||||| | ||||||||    
T  1324 aacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 1423  T
Q  227 gat 229  Q
    |||    
T  1424 gat 1426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 747 - 645
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgat 226  Q
    ||||||| ||| | ||||| ||| || |||| |||||||| ||||||  || ||||||| ||||||||||||| || |||  ||||||| | ||||||||    
T  747 aacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 648  T
Q  227 gat 229  Q
    |||    
T  647 gat 645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 42 - 4
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaa 106  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  42 tgttaatttgtcaagtgtgacttaacgttctacattgaa 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 5185 - 5286
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagattttgggagatgatgtggcgtcaatctcacttttgtggtcgctcttagtctaatgtgat 226  Q
    ||||||| |||||  |||||||| ||||||||||||||  |||||||| ||  |||||| |||||| ||| |||  ||||  ||||||||| ||||||||    
T  5185 aacatataagtgaagtgaccaatatacctaatgtcttactattttgggtgaatatgtggtgtcaatatca-tttgttggtttctcttagtcaaatgtgat 5283  T
Q  227 gat 229  Q
    |||    
T  5284 gat 5286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 33318 - 33184
Alignment:
Q  68 tgttaatttgtcaactgtgacttaaagttctacattgaacgcaaaaatacatgttgagaaacatattagtgagatgaccaatctacctaatgtcttaaga 167  Q
    ||||||| |||||| ||||| ||||| |   |||||||| |||| | || |||||||  ||||||| |||||||||||  || |  ||||||||||||||    
T  33318 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactcatat--ctaatgtcttaaga 33221  T
Q  168 ttttgggagatgatgtggcgtcaatctcacttttgtg 204  Q
    ||||||| || | ||||  |||||||| |||| ||||    
T  33220 ttttgggtgaagttgtgatgtcaatcttacttgtgtg 33184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 596 - 552
Alignment:
Q  127 aacatattagtgagatgaccaatctacctaatgtcttaagatttt 171  Q
    |||||||||||||||||||| || |||||||| ||||||| ||||    
T  596 aacatattagtgagatgacccatatacctaatatcttaaggtttt 552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University