View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4946_low_4 (Length: 661)

Name: NF4946_low_4
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4946_low_4
NF4946_low_4
[»] chr1 (2 HSPs)
chr1 (158-618)||(48013184-48013654)
chr1 (10-135)||(48013059-48013184)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 158 - 618
Target Start/End: Original strand, 48013184 - 48013654
Alignment:
Q  158 tttatttcatgtgactcattaattatgtgacgtggttaaaagatagcactagagaaatagaatccattcctcttgttgttttgtatagtctctacagctg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48013184 tttatttcatgtgactcattaattatgtgacgtggttaaaagatagcactagagaaatagaatccattcctcttgttgtgttgtatagtctctacagctg 48013283  T
Q  258 tactggtacattaccaatatcaccatttatgcatatttataggtgatcaagatcttaagcatgcatgtgtttggttctatggtaaaaaagtagagtcttc 357  Q
    |||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48013284 tactggtacattaccaatatcaccatttatgca----tataggtgattaagatcttaagcatgcatgtgtttggttctatggtaaaaaagtagagtcttc 48013379  T
Q  358 ctttnnnnnnntagannnnnnnnncgtgtgtgtggaaggtggaaat------------atatgagtggtagaatgtg---aaaannnnnnnagggcacgg 442  Q
    ||||       ||||         ||||||||||||||||||||||            |||||||||||||||||||   ||||       |||||||||    
T  48013380 ctttaaaaaaataga-ttttttttcgtgtgtgtggaaggtggaaatatagagcggataatatgagtggtagaatgtgaaaaaaaaaaatttagggcacgg 48013478  T
Q  443 tgcagttgactgggattttattaatccacatgcaatcagattccaaatcctatagcatcaacaacaaagtcatgtgcacataattcttagaataatcact 542  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48013479 tgcagttgactgggattttattaatccacatgcaatcagataccaaatcctatagcatcaacaacaaagtcatgtgcacataattcttagaataatcact 48013578  T
Q  543 atccaaatagaattcgaaataggattttataacaatcatannnnnnnagtttcaattcaaactcatgatcgttaat 618  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||    
T  48013579 atccaaatagaattcgaaataggattttataacaatcatatttttttagtttgaattcaaactcatgatcgttaat 48013654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 48013059 - 48013184
Alignment:
Q  10 ataatactccaataaaaagatttgataaggtacattacaaacctgattcgcaacacaaataaggnnnnnnntatatcatgctattttgaatataaacggt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||||||    
T  48013059 ataatgctccaataaaaagatttgataaggtacattacaaacctgattcgcagcacaaataaggaaaaaaacatatcatgctattttgaatataaacggt 48013158  T
Q  110 gcatagtgtttggcatagtatgtggt 135  Q
    ||||||||||||||||||||||||||    
T  48013159 gcatagtgtttggcatagtatgtggt 48013184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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