View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946_low_6 (Length: 545)
Name: NF4946_low_6
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Complemental strand, 31099320 - 31098787
Alignment:
| Q |
21 |
gattatgttagcttttagcctttcaagtttcaacctaagatctgttgatca----gtactctttcagtgtcttcttccagttcacatcctgcacaaattg |
116 |
Q |
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| T |
31099320 |
gattatgttagcttttagcctttcaagtttcaacctaagatctgttgattaattagtact-tttcagtgtcttcttccagctcacatcgtgcacaaattg |
31099222 |
T |
|
| Q |
117 |
atggttgnnnnnnnnacaataattataagaataggaagttgtccttgtgttagtctaaatgaagtattttattaaataaatgaatattaatctaattaaa |
216 |
Q |
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| T |
31099221 |
atggttgttttttt-acaataattataagaataggaagtagtccttgtgttagtccaaatgaagttttttattaaataaattaatattaatctaattaaa |
31099123 |
T |
|
| Q |
217 |
caaccatctttgttttgggtgcttttctccccaaagattttcaagagccgcataaacagagatctactgaaggaattggacttgctatgcttatatattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099122 |
caaccatctttgttttgggtgcttttctccccaaagattttccagagccacataaacagagatctactgaaggaattggacttgctatgcttatatattg |
31099023 |
T |
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| Q |
317 |
cttaggattcaattatttagaaaaacaacaaaaaggaaattaaggccttgctgcgttattcattgattagagttttcttcaaaattg------------- |
403 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31099022 |
cttaggattcaattatttagaaaaccaacaaaaaggaaattaagcccttgctgcgttattcattgattagagttttcttcaaagttgtgtttaatttagt |
31098923 |
T |
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| Q |
404 |
---tagctcatgttgaatttgagtttccttattacttatttaattttaaagtttagtcagctcaaaaacacgttgaaaaataaaattaatttgtatg-tt |
499 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31098922 |
ctttagctcatattgaatttgagtttccttattacttatttagttttaaagtttagtcagctcaaaaacacgttgaaaaataaaattaatttgtatgttt |
31098823 |
T |
|
| Q |
500 |
ttttatcgatcaatattgtgtatgtgttggcctttg |
535 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31098822 |
ttttatcgatcaatattgtgtatgtgttggcctttg |
31098787 |
T |
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