View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4946_low_8 (Length: 475)
Name: NF4946_low_8
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 9548929 - 9549211
Alignment:
| Q |
18 |
ggattttaccactaaacattagagatggatttgtacaatcacaatgtttttgttaacttgattttgatcgaagatcaaactttccgtctaatttcattgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9548929 |
ggattttaccactaaacattagagatagatttgttcaatcacaatgtttttgttaacttgattttgatcgaagatcaaactttccgtctaatttcattgt |
9549028 |
T |
|
| Q |
118 |
agttagtgattcaaggcgtcaatgaaacattgtgaggtacgcacatataacttaattatcatctcatatgatctattcaatcttgttatgttggagtaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9549029 |
agttagtgattcaaggcgtcaatgaaacattgtgaggtacgcacatataacttaattatcatctcatatgatctattcaatcttgttatgttggagtaat |
9549128 |
T |
|
| Q |
218 |
ataaaatctaacaaaataacttattagttttatttgatggggaattaacac--aaacaaaatatcaaaagaacatgttataga |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9549129 |
ataaaatctaacaaaataacttattagttttatttgatggggaattaacacataaacaaaatatcaaaagaacatgttataga |
9549211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University