View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4946_low_9 (Length: 446)
Name: NF4946_low_9
Description: NF4946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4946_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 45241934 - 45241505
Alignment:
| Q |
12 |
ttcttatgtttccctatatctgagtaaatttcttcaatatcggatgaagtctattattttgttatgcatcttctattcttatattattctgtatattaat |
111 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241934 |
ttcttatgtttccctatatcttagtaaatttcttcaatataggatgaagtctagtattttgttatgcatcttctattcttatattattctgtatatta-- |
45241837 |
T |
|
| Q |
112 |
tagaacatgtcatagaacttattagaagctattttttgctgcaaaaaatttggcatggcacatgaagcttgagcatcatatcaccatcaatttagatgtc |
211 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241836 |
--gaacatgtcatagaacttat-agaagctatttttcgctgcaaaaaatttggcatggcacatgaagcttgagcatcatatcaccatcaatttagatgtc |
45241740 |
T |
|
| Q |
212 |
aatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaaatgtttttggtgtctagatggagcaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241739 |
aatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaaatgtttttggtgtctagatggagcaa |
45241640 |
T |
|
| Q |
312 |
tcttcttttagtttgctacggatgcaattaatattgcatgtttaaaggaatgacttttaaaaggttttaattctttcttcgggcatatatacctagtatg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241639 |
tcttcttttagtttgctacggatgcaattaatattgcatgtttaaaggaatgactgttaaaaggttttaattctttcttcgggcatatatacctagtatg |
45241540 |
T |
|
| Q |
412 |
ttttttgtcctttagatcaatgatcattcaattct |
446 |
Q |
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| T |
45241539 |
ttttttgtcctttagatcaatgatcattcaattct |
45241505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 217 - 446
Target Start/End: Complemental strand, 45219543 - 45219312
Alignment:
| Q |
217 |
tgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaaatgtttttggtgtctagatggagcaatcttc |
316 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45219543 |
tgaagttgattgatttagaacctttgtgtttgtgaactataaaacgagtcaagcatgtagacttagtaaatgattttggtgtctagatggagcaatcttc |
45219444 |
T |
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| Q |
317 |
ttttagtttgctacggatgcaattaatattgcatgtttaaaggaatgacttttaaaaggttttaattctttcttcgggcatatatacctagtatgtt--t |
414 |
Q |
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||||||||||||| |||||||||||||||| ||||| ||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||| | |
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| T |
45219443 |
ttttagtttgctatggatgcaattaatattccatgtgtaaaggaatgattgttaaaagtttttaattctttctttgggcatatatacctagtatgttttt |
45219344 |
T |
|
| Q |
415 |
tttgtcctttagatcaatgatcattcaattct |
446 |
Q |
| |
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||| || ||||||||||||||||||||||||| |
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| T |
45219343 |
tttttcttttagatcaatgatcattcaattct |
45219312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 39426897 - 39426791
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatg |
273 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| || || | |||||||||||||| ||||||||||||| |||| |
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| T |
39426897 |
tgaagcttgagcatcatatcaccatcaatttaaatgtcaatattgaaaatggtcgatctagaaaatctgtgtttgtgaactctaaaatgaggcaatcatg |
39426798 |
T |
|
| Q |
274 |
tagactt |
280 |
Q |
| |
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||||||| |
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| T |
39426797 |
tagactt |
39426791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 39426199 - 39426148
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatga |
225 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
39426199 |
tgaagcatgagcatcatatcacagtcaatttagatgtccatattgaaaatga |
39426148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 9287581 - 9287490
Alignment:
| Q |
181 |
tgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcat |
272 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||| ||| |||||||| || |||||||||||||||| |||| |||||||||||| |
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| T |
9287581 |
tgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcat |
9287490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 9300899 - 9300763
Alignment:
| Q |
187 |
tcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaaa |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| | |||||| || |||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
9300899 |
tcatatcacagtcaatttagatgtcaatattgaaaatggtcgatttaaaaaatttgtgtttgtgaactctaaaatgaggcaagcat-----cttagt-aa |
9300806 |
T |
|
| Q |
287 |
tgtttttggtgtctagatggagcaatcttcttttagtttgcta |
329 |
Q |
| |
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|| ||||||| || ||||| |||||||| |||| |||||||| |
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| T |
9300805 |
tgattttggtatccagatgcagcaatctctttttggtttgcta |
9300763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 10346713 - 10346612
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctt---tgtgtttgtgaactataaaatgaggcaagc |
270 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| ||| ||| | ||||| || || |||||||||||||| ||||||||||||||| |
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| T |
10346713 |
tgaagcatgagcatcatatcaccatcaatttagatgtcaatatcgaaaatggtcgatttgaaaatttgtatgtgtttgtgaactctaaaatgaggcaagc |
10346614 |
T |
|
| Q |
271 |
at |
272 |
Q |
| |
|
|| |
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|
| T |
10346613 |
at |
10346612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 10351184 - 10351082
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctt----tgtgtttgtgaactataaaatgaggcaag |
269 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||||||||||||||||| ||| | |||||| || || |||||||||||||| ||||||||| |||| |
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|
| T |
10351184 |
tgaagcatgatcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttgtgaactctaaaatgagccaag |
10351085 |
T |
|
| Q |
270 |
cat |
272 |
Q |
| |
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||| |
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|
| T |
10351084 |
cat |
10351082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 10334706 - 10334603
Alignment:
| Q |
175 |
gaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataa------cctttgtgtttgtgaactataaaatgaggcaa |
268 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| ||| | |||||| || ||||||||| |||||| ||||||||||||| |
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|
| T |
10334706 |
gaagcatgagcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatttgtgtttttgaactctaaaatgaggcaa |
10334607 |
T |
|
| Q |
269 |
gcat |
272 |
Q |
| |
|
|||| |
|
|
| T |
10334606 |
gcat |
10334603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 9271724 - 9271622
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtg----aactataaaatgaggcaag |
269 |
Q |
| |
|
|||||| ||| | |||| |||| |||||||||||||||||||||||| ||| | |||||| || |||| ||||||| ||| |||||||||||||| |
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| T |
9271724 |
tgaagcatgaacttcatgtcacaatcaatttagatgtcaatattgaaaatggtcgatttaaaagatttgggtttgtggactgactctaaaatgaggcaag |
9271625 |
T |
|
| Q |
270 |
cat |
272 |
Q |
| |
|
||| |
|
|
| T |
9271624 |
cat |
9271622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 270
Target Start/End: Original strand, 10856990 - 10857117
Alignment:
| Q |
144 |
tttttgctgcaaaaaatttggcat-ggcacatgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttg |
242 |
Q |
| |
|
|||| |||||||| | |||||||| |||| | |||| |||||||||||||||| ||||||||||||| |||||| || ||| | |||||| || |||| |
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|
| T |
10856990 |
ttttggctgcaaagattttggcataggcatgtaaagcatgagcatcatatcaccttcaatttagatgtaaatattcaatatggtcgatttaaaaaatttg |
10857089 |
T |
|
| Q |
243 |
tgtttgtgaactataaaatgaggcaagc |
270 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
10857090 |
tgtttgtgaactctaaaatgaggcaagc |
10857117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 26573973 - 26573873
Alignment:
| Q |
174 |
tgaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttg--tgtttgtgaactataaaatgaggcaagca |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || |||| |||||||||||| |||||||||||||||| |
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|
| T |
26573973 |
tgaagcttgagcatcatatcaccatcaatgtagatgtcaatattgaaattgggcaatttaaaaaatttgtatgtttgtgaactctaaaatgaggcaagca |
26573874 |
T |
|
| Q |
272 |
t |
272 |
Q |
| |
|
| |
|
|
| T |
26573873 |
t |
26573873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 560559 - 560526
Alignment:
| Q |
181 |
tgagcatcatatcaccatcaatttagatgtcaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
560559 |
tgagcatcatatcaccatcaatttagatgtcaat |
560526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 36223704 - 36223632
Alignment:
| Q |
189 |
atatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||| || | |||||||||||||| |||||| |
|
|
| T |
36223704 |
atatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaat |
36223632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 36223532 - 36223480
Alignment:
| Q |
337 |
aattaatattgcatgtttaaaggaatgacttttaaaaggttttaattctttctt |
390 |
Q |
| |
|
|||||||||||||||||||||||| |||| | || |||||||||||||||||| |
|
|
| T |
36223532 |
aattaatattgcatgtttaaaggagtgac-tgtagtaggttttaattctttctt |
36223480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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