View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4947-Insertion-1 (Length: 400)

Name: NF4947-Insertion-1
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4947-Insertion-1
NF4947-Insertion-1
[»] chr2 (9 HSPs)
chr2 (220-399)||(824782-824961)
chr2 (8-174)||(824612-824782)
chr2 (194-371)||(989773-989950)
chr2 (194-290)||(1012172-1012268)
chr2 (317-399)||(410248-410333)
chr2 (322-399)||(821147-821227)
chr2 (197-280)||(1043976-1044059)
chr2 (322-373)||(965481-965532)
chr2 (258-399)||(1024900-1025040)
[»] scaffold0244 (1 HSPs)
scaffold0244 (220-317)||(6036-6133)
[»] chr6 (1 HSPs)
chr6 (317-373)||(10116763-10116819)
[»] chr4 (1 HSPs)
chr4 (136-234)||(40640740-40640839)
[»] chr7 (1 HSPs)
chr7 (214-283)||(32246796-32246865)
[»] chr5 (1 HSPs)
chr5 (322-399)||(36199114-36199190)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 220 - 399
Target Start/End: Original strand, 824782 - 824961
Alignment:
Q  220 taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcaca 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824782 taatttaggtgaatcaaccacaacgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcaca 824881  T
Q  320 actgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824882 actgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttat 824961  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 824612 - 824782
Alignment:
Q  8 gttgggacatgtgattacatttgataattctgttttctctnnnnnnnttaccaatatctgtgttaacaagtcatatgatgtattagtgtttcatagagtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824612 gttgggacatgtgattacatttgataattctgttttctctaaaaaaattaccaatatctgtgttaacaagtcatatgatgtattagtgtttcatagagtt 824711  T
Q  108 agattaaatgcataatacactgattgaatgggatggaaaacaaagca----aaaatgtgatttatctgcgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  824712 agattaaatgcataatacactgattgaatgggatggaaaacaaagcaaattaaaatgtgatttatctgcgt 824782  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 371
Target Start/End: Complemental strand, 989950 - 989773
Alignment:
Q  194 ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctc 293  Q
    |||||||||| |||||||||| |||||||||||||  ||| | |  |||||||||| || ||||||||| |  |||||||||||||||||| ||||||||    
T  989950 ctgatttgatagtgtgtctttgtacataatttaggcaaataagctgcagcgcccttgtgttgacattcccatgtttcataatttgacccacttggagctc 989851  T
Q  294 cactatgtattggatttggtagcacaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt 371  Q
     || ||   | ||||||||||| |||| |||||||||||| |||||||||||| |||||  ||||||||| |||||||    
T  989850 tacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcaggtttgt 989773  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 290
Target Start/End: Complemental strand, 1012268 - 1012172
Alignment:
Q  194 ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggag 290  Q
    |||| ||||| |||||||||| ||||| |||||||||||||  | ||||| ||||||||||||||||  || ||||||||||||||||||| |||||    
T  1012268 ctgaattgatagtgtgtctttttacattatttaggtgaatcggctacagctcccttatgatgacatttatatctttcataatttgacccacttggag 1012172  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 410248 - 410333
Alignment:
Q  317 acaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt---ttaagtttaagaatcgtatttggtttat 399  Q
    |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||   |||| |||||||||| |||||| |||||    
T  410248 acaagtgctccaccattgccctaagcttcaaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgatttat 410333  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 821147 - 821227
Alignment:
Q  322 tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttg---tttaagtttaagaatcgtatttggtttat 399  Q
    |||||||||| | |||||||||||| |||||||||||||||| ||||||    ||||||||||||||| |||||| |||||    
T  821147 tgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgatttat 821227  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 1043976 - 1044059
Alignment:
Q  197 atttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgac 280  Q
    ||||||| |||  ||||||||||||||||||||||||||    ||||| |||||||||||||||  || ||||| |||||||||    
T  1043976 atttgatagtgcatctttctacataatttaggtgaatcagttgcagcgtccttatgatgacatttatatctttcgtaatttgac 1044059  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 965532 - 965481
Alignment:
Q  322 tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgttt 373  Q
    ||||||| || | |||||||||||| |||||||||||||||| |||||||||    
T  965532 tgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgttt 965481  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 1025040 - 1024900
Alignment:
Q  258 attcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcacaactgctccaccacttccctaagcttcagaatcttgaac 357  Q
    ||||||| |||||||||||||||  || ||||||||||| |    | | ||||| ||  |||| | || ||||||| |||||||||||| |||||  ||     
T  1025040 attcctatctttcataatttgacatacttggagctccacaacagttggcatttgatattacaagttcttcaccactgccctaagcttcaaaatctcaaaa 1024941  T
Q  358 tttatcgggtttgtttaagtttaagaatcgtatttggtttat 399  Q
    ||||   |||||||| ||||||||||||| ||||||||||||    
T  1024940 tttacgaggtttgtt-aagtttaagaatcatatttggtttat 1024900  T

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Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 6133 - 6036
Alignment:
Q  220 taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagca 317  Q
    |||||||||||||||| |||||  |  |||||| ||| ||| ||| ||||||||||||||||||| |||| |||||| ||   | |||||||||||||    
T  6133 taatttaggtgaatcagccacaaggatcttatggtgatatttctatctttcataatttgacccacttggaactccacaatagttgggatttggtagca 6036  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 10116819 - 10116763
Alignment:
Q  317 acaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgttt 373  Q
    |||| |||||||||| | |||||| ||||| |||||||||||||||| |||||||||    
T  10116819 acaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgttt 10116763  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 40640740 - 40640839
Alignment:
Q  136 tgggatggaaaacaaagcaaaaatgtgatttatctgcgttttattttgggaa-tttgctctgatttgatggtgtgtctttctacataatttaggtgaatc 234  Q
    |||||||||||||| || | |||||| ||| || ||| |||| ||||| ||| ||| | |||||||||||||||| | ||||| |||||||| |||||||    
T  40640740 tgggatggaaaacacagtagaaatgttattcatatgcattttcttttgagaacttttccctgatttgatggtgtgccattctaaataatttaagtgaatc 40640839  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 32246796 - 32246865
Alignment:
Q  214 tctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgaccca 283  Q
    ||||||||||| ||| ||||||||  || | |||||| ||||| |||||||  |||||||||||||||||    
T  32246796 tctacataattcaggcgaatcaacttcaacacccttacgatgatattcctatttttcataatttgaccca 32246865  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 36199114 - 36199190
Alignment:
Q  322 tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttat 399  Q
    |||| ||||||| |||||| ||||| | |||||||||||| | |||||| ||||| |||||||| |||||| ||||||    
T  36199114 tgcttcaccactgccctaaacttcaaattcttgaactttaccaggtttg-ttaagattaagaattgtatttagtttat 36199190  T

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