View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4947_high_1_N (Length: 472)
Name: NF4947_high_1_N
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4947_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 15688463 - 15688921
Alignment:
| Q |
1 |
catggttgaccacttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaagg |
100 |
Q |
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| T |
15688463 |
catggttgaccacttgaaagaatccccacttttcacttgcatactttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaagg |
15688562 |
T |
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| Q |
101 |
tccaaaatctatgattggaatactaggattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtc |
200 |
Q |
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| T |
15688563 |
tccaaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaatgaaaatctttgggactttggtc |
15688662 |
T |
|
| Q |
201 |
aaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgattt |
300 |
Q |
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| T |
15688663 |
aaaccagcatctacaagtccttttacaccttcttttgattcatcaagcagctttaactctttctgtctatcataaacatgttcatggtcttgtttgattt |
15688762 |
T |
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| Q |
301 |
cttctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgagaaattgtctttggctttttgggatattgtacagtgatgt |
400 |
Q |
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| T |
15688763 |
cttctaggtttgtgttcaccatgtttgagtttctttctttgacaacaactcaacagaggagatattgtctttggctttttgggatattgtacagtgatgt |
15688862 |
T |
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| Q |
401 |
ctctgctactccacttttaaaataagccaaaaaagaatgatctaaactgtaacaagaat |
459 |
Q |
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| T |
15688863 |
ctttgtctctccaattttaaaataagccaaaaaagaatgatctaaactgtaacaggaat |
15688921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 15682123 - 15682445
Alignment:
| Q |
1 |
catggttgaccacttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaagg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15682123 |
catggttgaccacttgaaagaacccccacttttcacttgcatgctttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaagg |
15682222 |
T |
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| Q |
101 |
tccaaaatctatgattggaatactaggattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtc |
200 |
Q |
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| T |
15682223 |
accaaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaatgaaaatctttgggactttggtc |
15682322 |
T |
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| Q |
201 |
aaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgattt |
300 |
Q |
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| T |
15682323 |
aaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttctgtctatcataaacatgttcatgttcttgtttgattt |
15682422 |
T |
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| Q |
301 |
cttctaggtttgtgttcaccatg |
323 |
Q |
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||||||| ||||||||||||||| |
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| T |
15682423 |
cttctagatttgtgttcaccatg |
15682445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 15684182 - 15684570
Alignment:
| Q |
14 |
ttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggtccaaaatctatg |
113 |
Q |
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| T |
15684182 |
ttgaaagaa-ccccacttttcacttgcatgctttactttctcaattatctctaaacgtgaacttgaacttgtgt-ggtaaataaaggtccaaagtctatg |
15684279 |
T |
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| Q |
114 |
attggaatactaggattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtcaaaccagcatcta |
213 |
Q |
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| T |
15684280 |
attggaatactaagattggttgaactggtttgtttgttgttatgttcatgaaccttatcatgaatgaaaatctttgggaatttggtcaaaccagcatcaa |
15684379 |
T |
|
| Q |
214 |
caagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgatttcttctaggtttgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
15684380 |
caagtccttttacaccttcttttgattcatcaagaagcattaactctttgtgtctatcataaacatgttcacggtcttgtttgatttcttctagatttgt |
15684479 |
T |
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| Q |
314 |
gttcaccatgtttgagtttctttctttggcaacaactcaacagatgaga-aattgtc-tttggctttttgggatattgtacagtgatgtct |
402 |
Q |
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| T |
15684480 |
gttccccatgtttgagtttctttcttggacaacaaaacaacagatgagatatttgtcttttgtttttttgggaaattgtacaatgatgtct |
15684570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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