View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4947_high_2 (Length: 358)
Name: NF4947_high_2
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4947_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 824594 - 824254
Alignment:
| Q |
6 |
gtattaaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgagataacatgcatactattcataatgtgttgggtacaatgtggattt |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
824594 |
gtatgaaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgaggtaacatgcatactatttataatgtgttgggtacaatgtggattt |
824495 |
T |
|
| Q |
106 |
atctatgcggagagacactgatgtagaaaatgctttccacataaaataagagcatgaacattgattcatatatgttcttgtcaatttgggtaagtctaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
824494 |
atctatgcggagagacactgatgtagaaaatgctttccacataaaataagagcatgaacattgattcatatatgctcttgtcaatttgggtaagtctaag |
824395 |
T |
|
| Q |
206 |
tttgtggagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcgg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
824394 |
tttgtggagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgtgg |
824295 |
T |
|
| Q |
306 |
cagaggatatcgtcaggtaaactgctgatagtatccatctg |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
824294 |
cagaggatatcgtcaggtaaattgctgatagtatccatctg |
824254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 990870 - 990989
Alignment:
| Q |
215 |
attgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggata |
314 |
Q |
| |
|
|||||||| ||| ||||| |||| |||||| |||||||||||||| ||||| ||||||| || ||| |||| ||||| |||||||||||| | ||||| |
|
|
| T |
990870 |
attgggaagataatgccagagattagtccacctcttggacaaaacgcttgtagcaactgcttcttttgtggatacaaatgagagaatgcggaaaaggatt |
990969 |
T |
|
| Q |
315 |
tcgtcaggtaaactgctgat |
334 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
990970 |
tcgtcgggcaaactgctgat |
990989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 1013092 - 1013181
Alignment:
| Q |
213 |
agattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatg |
302 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||| || | || ||||||||||||| || |||||| | | ||||||||||||| |
|
|
| T |
1013092 |
agattgggaacatgatgccataggtgaatccatctctttgatagaatgcttgttgcaactgattctttggttgtgagaaaagagagaatg |
1013181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 35766399 - 35766297
Alignment:
| Q |
229 |
gccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggatatcgtcaggtaaact |
328 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||| | | || ||||| ||||||||||||||| |||| || | |||||| |||||||| |
|
|
| T |
35766399 |
gccaaagatgagtccatctcttggacaaaacgcttgtggcaacggcctcttgggtggagacaaaagagagaatgtggcaaagaacatcgtctggtaaact |
35766300 |
T |
|
| Q |
329 |
gct |
331 |
Q |
| |
|
||| |
|
|
| T |
35766299 |
gct |
35766297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 22054600 - 22054516
Alignment:
| Q |
219 |
ggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgc |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||| |||||| |||| || | |||||| | || ||||||||||||| |
|
|
| T |
22054600 |
ggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtaagtaaagagagaatgc |
22054516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 40639961 - 40639890
Alignment:
| Q |
212 |
gagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggt |
283 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||| || | || ||||||||||||| || |||||| |
|
|
| T |
40639961 |
gagattaggaacatggtgccatagatgaatccatctctttgaaagaatgcttgttgcaactgattctttggt |
40639890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University