View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4947_high_5 (Length: 342)
Name: NF4947_high_5
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4947_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2698820 - 2698540
Alignment:
| Q |
1 |
gaaatatgataagtaaattattcagatttatcaaaatggatgattagtaacataaatgaattgaat-attatattcattaat----aacaccattactaa |
95 |
Q |
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| T |
2698820 |
gaaatatgataagtaaattattcagatttgtcaaaatggatatttggtaacataaatgaattgaatcattatatccattaattaataacaccattactaa |
2698721 |
T |
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| Q |
96 |
tatcggcacttaattctcaaaacctctgttcaaattgtctaggtttgtgacgtgatgctatttcttttaaaatggttgatcaatatcgtcaccatcgttg |
195 |
Q |
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| T |
2698720 |
tatcgacactaaattctcaaaacttccgttcaaattgtctaggtttgtgacgtgatactatttcgtttaaaatagttgatcgatatcgtcaccgtcattg |
2698621 |
T |
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| Q |
196 |
atgtacagttgatatagatatgaatcatttgacagtttgaggttgtgctttggattgtaatgcttgaaagggcggtgtctt |
276 |
Q |
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| T |
2698620 |
atgtatagttgatataggtatgaatcatttgacagtttgaggttttgctttggactgtaatgcttgaaaggacggtgtctt |
2698540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 2698499 - 2698441
Alignment:
| Q |
274 |
cttatgtgtgagtgtttttgtcatagtaaatggtgggtacgtgtgcaattgcttctgtg |
332 |
Q |
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| T |
2698499 |
cttatgtgtgggtgttttcgtcatagtaaatggtgggtacgtgtgcaactgcttctgtg |
2698441 |
T |
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