View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4947_high_6 (Length: 337)
Name: NF4947_high_6
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4947_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 9304766 - 9304940
Alignment:
| Q |
1 |
ataagctctgtggaaagactaaacaatgtggtttacatgcctgtagcagaatatgtcactcctcaccttgtgataatcagcatgttgtgcaaggtattcg |
100 |
Q |
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| T |
9304766 |
ataagctctgtggaaagactaaacaatgtggtttacatgcctgtagcagaatatgtcactcctcaccttgtgataatcagcatgttgtgcaaggtattcg |
9304865 |
T |
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| Q |
101 |
aacttcatgtgggcaatcatgtggcgctccgaggagagattgccgacatacatgtacagctccttgtcacccttc |
175 |
Q |
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| T |
9304866 |
aacttcatgcgggcaatcatgtggcgctccgaggagagactgccgacatacatgtacagctccttgtcacccttc |
9304940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 9306004 - 9305840
Alignment:
| Q |
172 |
cttctttcttccaaatagatgattgaatatttgcacaatcagtagtcccctcttgatcatcccaagaatcttctctacaagctggttctataataacagc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9306004 |
cttctttcttccaaatagatgattgaatatttgcacaatcagtagtcccctcttgatcatcccaagaatcttctctacaagctggttctataataacagc |
9305905 |
T |
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| Q |
272 |
ctgtttccacatataacccgtcaatgttgtcagcgcaccgcctttcactgtctctgctcctcctc |
336 |
Q |
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| T |
9305904 |
ctgtttccacatataacccgtcaatgttgtcagcgcaccgcctttcactgtctcagctcctcctc |
9305840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26284738 - 26284805
Alignment:
| Q |
8 |
ctgtggaaagactaaacaatgtggtttacatgcctgtagcagaatatgtcactcctcaccttgtgata |
75 |
Q |
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|||||||| ||||| |||||| ||||||||||| ||| | ||| |||||||||| |||||||||||| |
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| T |
26284738 |
ctgtggaaggactagacaatgcggtttacatgcatgtggtagatcatgtcactccccaccttgtgata |
26284805 |
T |
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