View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4947_high_7 (Length: 313)
Name: NF4947_high_7
Description: NF4947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4947_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 824594 - 824474
Alignment:
| Q |
6 |
gtattaaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgagataacatgcatactattcataatgtgttgggtacaatgtggattt |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
824594 |
gtatgaaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgaggtaacatgcatactatttataatgtgttgggtacaatgtggattt |
824495 |
T |
|
| Q |
106 |
atctatgcggagagacactga |
126 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
824494 |
atctatgcggagagacactga |
824474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 33513555 - 33513643
Alignment:
| Q |
213 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctctgccctctc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33513555 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctccgccctctc |
33513643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 34121033 - 34121120
Alignment:
| Q |
213 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctctgccctct |
300 |
Q |
| |
|
|||||||| ||| ||| |||||| |||||||||||||||||| || ||| | |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
34121033 |
ccatttcaccccgttcgccaaattcccaaaaaccctaacccttaaacccctccaatggaagacttcaaccaccacctctccgccctct |
34121120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University