View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-2 (Length: 676)
Name: NF4948-Insertion-2
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 42095895 - 42095341
Alignment:
| Q |
8 |
agtaagcatatcaaggactcaatcaagtgcatcattcatgaagaaattttccaaggtaaaagggattaagccaagggaatatagtgctgtgcaagattgc |
107 |
Q |
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| T |
42095895 |
agtaagcatatcaaggactcaatcaagtgcatcattcatgaagaaattttccaaggtaaaagggattaagccaagggaatatagtgctgtgcaagattgc |
42095796 |
T |
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| Q |
108 |
aaagcaaacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggtaaggctaagagagaggatttggtttggcatataa |
207 |
Q |
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| T |
42095795 |
aaagcaaacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggtaaggctaagggagaggatttggtttggcatataa |
42095696 |
T |
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| Q |
208 |
gtaatgttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaat |
307 |
Q |
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| T |
42095695 |
ataatgttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaat |
42095596 |
T |
|
| Q |
308 |
tggtgctaaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcctccaagcatcgttaactatgtac----atactt |
403 |
Q |
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| T |
42095595 |
tggtgctaaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcctccaagcatcgttaactatttacatatatactt |
42095496 |
T |
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| Q |
404 |
gtgaaaagtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactata |
503 |
Q |
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| T |
42095495 |
gtgaaaagtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactata |
42095396 |
T |
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| Q |
504 |
tttagttctaggaagtgnnnnnnnnngcaactgtaaccatgtcgtgcaagatcata |
559 |
Q |
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| T |
42095395 |
tttagttcttggaagtg-ttttttttgcaactgtaaccgtgtcgtgcaagatcata |
42095341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 599 - 676
Target Start/End: Complemental strand, 42095301 - 42095224
Alignment:
| Q |
599 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtgga |
676 |
Q |
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| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtgga |
42095224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 1665281 - 1665249
Alignment:
| Q |
197 |
ttggcatataagtaatgttcaaacttgggttag |
229 |
Q |
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| T |
1665281 |
ttggcatataagtaatgttcaaacatgggttag |
1665249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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