View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-3 (Length: 433)
Name: NF4948-Insertion-3
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 52163694 - 52164119
Alignment:
| Q |
8 |
aagccatgagtcattaacatgaatatcagatatcgacaccggtaataattgaatgtattacacatgtgttactgtcaaacacgcctttcatcacaggtag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52163694 |
aagccatgagtcattaacatgaatatcagatatcgacaccggtaataattgaatgtattacacatgtgttactttcaaacacgcctttcatcacaggtag |
52163793 |
T |
|
| Q |
108 |
tgaattgaagatttgtcaagaaccaaaagaaaatggagtttgtagcagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaat |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163794 |
tgaattgaagatttgtcaagaatcaaaagaaaatggagtttgtaacagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaat |
52163893 |
T |
|
| Q |
208 |
ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163894 |
ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat |
52163993 |
T |
|
| Q |
308 |
gttgattccacctatgatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163994 |
gttgattccacctatgatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaa |
52164093 |
T |
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| Q |
408 |
ctccatccaatcctcaatctttgcag |
433 |
Q |
| |
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| T |
52164094 |
ctccatccaatcctcaatctttgcag |
52164119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 42171903 - 42171847
Alignment:
| Q |
207 |
tctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg |
263 |
Q |
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| T |
42171903 |
tctaagccaaggcttccctttcccactccaatgcaaaagactcaccggaccaggatg |
42171847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 123 - 430
Target Start/End: Original strand, 6634914 - 6635221
Alignment:
| Q |
123 |
tcaagaaccaaaagaaaatggagtttgtagcagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggttta |
222 |
Q |
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||||||| ||| ||||||||| || || | |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||| |||||| |
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| T |
6634914 |
tcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggttta |
6635013 |
T |
|
| Q |
223 |
cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctat |
322 |
Q |
| |
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||||| |||||||||||||| |||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
6635014 |
ccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctat |
6635113 |
T |
|
| Q |
323 |
gatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatccaatcctc |
422 |
Q |
| |
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||||||| ||| |||| | ||| ||||||||||||||||| || ||||| ||||| | ||||||||| ||||||||||| || || |||||||| ||||| |
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| T |
6635114 |
gatccactggaacaatttcccctgcaaaaacaagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctc |
6635213 |
T |
|
| Q |
423 |
aatctttg |
430 |
Q |
| |
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|||||||| |
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| T |
6635214 |
aatctttg |
6635221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 40207521 - 40207480
Alignment:
| Q |
288 |
attatcaccaccaagtccatgttgattccacctatgatccac |
329 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
40207521 |
attatcacctccaagtccgtgttgattccacctatgatccac |
40207480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 223 - 416
Target Start/End: Complemental strand, 33346779 - 33346586
Alignment:
| Q |
223 |
cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctat |
322 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || ||||| | || | |||||| ||||||||||||||||| || || ||||| |||||||||| | |
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| T |
33346779 |
ccttttccactccaatgcaacaaactcaccgggcctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccaccggt |
33346680 |
T |
|
| Q |
323 |
gatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatcca |
416 |
Q |
| |
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|||||||||| | ||| ||||||||||||| | ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
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| T |
33346679 |
gatccaccggcgtaatcctcccggcaaaaaccaacaaaaacggcggcaacgaaccaagctcatagattctcattctcttctgcaactccatcca |
33346586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 138 - 416
Target Start/End: Original strand, 7266233 - 7266511
Alignment:
| Q |
138 |
aaatggagtttgtagcagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaa |
237 |
Q |
| |
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||||||||||| || || ||||| || ||||| | |||||||| |||||||| | | ||||||| | || |||| |||||||| |||||||||||| |
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| T |
7266233 |
aaatggagtttcaagaaggtcatatggggcccacaaagcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaa |
7266332 |
T |
|
| Q |
238 |
tgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaa |
337 |
Q |
| |
|
|| | |||||||| || || ||||| | || | |||||| ||| | ||||||||||| ||||| |||||||||||||||| |||||| |||||| | | |
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|
| T |
7266333 |
tgaagtaaactcaccgggcccggatgcaaatcccgacaaagcccatggaaattatcaccgccaagcccatgttgattccaccgatgatcaaccggaacta |
7266432 |
T |
|
| Q |
338 |
tattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatcca |
416 |
Q |
| |
|
| || || || |||||||||| |||||||||||| ||||| | |||||||||||||| |||||||| | ||||||||| |
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|
| T |
7266433 |
ttttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcatagatcctcattctcttctgaagctccatcca |
7266511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 429
Target Start/End: Original strand, 15964232 - 15964453
Alignment:
| Q |
208 |
ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| | | |||||||| |||| |||||||||||||||||||||| |
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| T |
15964232 |
ctaacccaaggttttccttttccactccaatgcaataaactaacaggaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccat |
15964331 |
T |
|
| Q |
308 |
gttgattccacctatgatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaa |
407 |
Q |
| |
|
|||||||||| |||||||| | | ||| ||| || ||||||||||| ||||| || ||||| ||||| | |||||||| || || |||| || || |
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|
| T |
15964332 |
gttgattccatctatgatcaatagcttcaacatttcctgcaaaaacaagtaaaaaaggtggcaatgaacctagctcatagattcttctcttcttttgtaa |
15964431 |
T |
|
| Q |
408 |
ctccatccaatcctcaatcttt |
429 |
Q |
| |
|
||||||||| | ||||||||| |
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|
| T |
15964432 |
ctccatccagttttcaatcttt |
15964453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 2498502 - 2498608
Alignment:
| Q |
217 |
ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc |
316 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | |||||||| | || || ||||||||||||||| ||||||||||||| |
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|
| T |
2498502 |
ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc |
2498601 |
T |
|
| Q |
317 |
acctatg |
323 |
Q |
| |
|
| ||||| |
|
|
| T |
2498602 |
atctatg |
2498608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 27101090 - 27101196
Alignment:
| Q |
217 |
ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc |
316 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | |||||||| | || || ||||||||||||||| ||||||||||||| |
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|
| T |
27101090 |
ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc |
27101189 |
T |
|
| Q |
317 |
acctatg |
323 |
Q |
| |
|
| ||||| |
|
|
| T |
27101190 |
atctatg |
27101196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 37500754 - 37500870
Alignment:
| Q |
213 |
ccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttga |
312 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||| ||||| || ||||||||| | ||||| ||| || ||| || || || | ||||||||| |
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|
| T |
37500754 |
ccaaggtttacccttcccactccaatgaagcaaactaacaggcccaggatgaagactcctacatttaccttcaatattgtcccctcctaaaccatgttga |
37500853 |
T |
|
| Q |
313 |
ttccacctatgatccac |
329 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37500854 |
ttccacctatgatccac |
37500870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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