View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-4 (Length: 202)
Name: NF4948-Insertion-4
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 1875308 - 1875127
Alignment:
| Q |
23 |
gattaagtgacgacattcgagtg--acatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaacct |
120 |
Q |
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| T |
1875308 |
gatttagtgacgacattcgagtgtgacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaacct |
1875209 |
T |
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| Q |
121 |
tgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcacca |
202 |
Q |
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| T |
1875208 |
tgatcattatcaaaaaaatccaatggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcacca |
1875127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 1885515 - 1885384
Alignment:
| Q |
70 |
cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt |
169 |
Q |
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| T |
1885515 |
cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt |
1885417 |
T |
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| Q |
170 |
gaaagagaaggtatagctgtttggccatcacca |
202 |
Q |
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| T |
1885416 |
gaaagagaaggtatggctgtttggctatcacca |
1885384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 1885738 - 1885691
Alignment:
| Q |
17 |
gaggcagattaagtgacgacattcga--gtgacatcaggtggttccga |
62 |
Q |
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| T |
1885738 |
gaggccgattaagtgacgacattcgagtgtgacatcaggtggttccga |
1885691 |
T |
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