View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-5 (Length: 185)
Name: NF4948-Insertion-5
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 595637 - 595459
Alignment:
| Q |
7 |
actcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagasagtaatccatttttgctatgattggtaaaatagtactaaaatt |
106 |
Q |
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| T |
595637 |
actcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggtaaaatagtactaaaatt |
595538 |
T |
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| Q |
107 |
agtttgagcaataacaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttg |
185 |
Q |
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| T |
595537 |
agtttgaacaataacaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttg |
595459 |
T |
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Target: chr5 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 4590123 - 4590038
Alignment:
| Q |
7 |
actcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagasagtaatccatttttgctatgattggtaaa |
92 |
Q |
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| T |
4590123 |
actctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
4590038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 4603761 - 4603679
Alignment:
| Q |
13 |
gaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagasagtaatccatttttgctatgattggtaaaata |
95 |
Q |
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| T |
4603761 |
gaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaata |
4603679 |
T |
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