View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-6 (Length: 93)
Name: NF4948-Insertion-6
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 31560965 - 31560880
Alignment:
| Q |
8 |
ctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttgttcatttccttctccttctatagtacttta |
93 |
Q |
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| T |
31560965 |
ctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttgttcatttcctactccttctatagtacttta |
31560880 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31558988 - 31558936
Alignment:
| Q |
8 |
ctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattc |
60 |
Q |
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| T |
31558988 |
ctaaaaatatatatgtagcttgaacaatgatacaacctacttctatattattc |
31558936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 31555957 - 31555903
Alignment:
| Q |
11 |
aaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttgtt |
65 |
Q |
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| T |
31555957 |
aaaatatatatgtagcttgaacaatgatccaacctacttctatattattcttgtt |
31555903 |
T |
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