View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948-Insertion-7 (Length: 89)
Name: NF4948-Insertion-7
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948-Insertion-7 |
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| [»] chr1 (4 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 32593410 - 32593329
Alignment:
| Q |
8 |
ccttctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
32593410 |
ccttctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
32593329 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 51823884 - 51823962
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
51823884 |
tctgcctcttttttctttgcgtatagatctgcttcagctgcttgcttgcacgcataaaatgttgcatctgccaatgctt |
51823962 |
T |
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Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 31526994 - 31527072
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
31526994 |
tctgcctcttttttctttgcatatagctccgcttcggctgcttgcttgcgcgcataaaatgttgcatctgacaatgctt |
31527072 |
T |
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Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 37030333 - 37030411
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
37030333 |
tctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctt |
37030411 |
T |
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Target: chr3 (Bit Score: 63; Significance: 5e-28; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 49207122 - 49207200
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
49207122 |
tctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctt |
49207200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 49211696 - 49211774
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
49211696 |
tctgcctcttttttctttgcgtacagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctt |
49211774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 49190878 - 49190956
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctt |
89 |
Q |
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| T |
49190878 |
tctgcctcctttttctttgcatatagctctgcttcagctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctt |
49190956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 49202167 - 49202237
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgc |
81 |
Q |
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| T |
49202167 |
tctgcctcttttttctttgcgtatagctctgcttcggcttcttgcttgcaagcataaaatgttgcatctgc |
49202237 |
T |
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Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 49187187 - 49187258
Alignment:
| Q |
11 |
tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgcc |
82 |
Q |
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| T |
49187187 |
tctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgcc |
49187258 |
T |
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Target: chr8 (Bit Score: 43; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 26756168 - 26756242
Alignment:
| Q |
14 |
gcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgct |
88 |
Q |
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| T |
26756168 |
gcctccttcttctttgcatatagctctgcttcggctgcttgtttacgagcataaaatgttgcatttgccaatgct |
26756242 |
T |
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