View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_high_9 (Length: 251)
Name: NF4948_high_9
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_high_9 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 35952419 - 35952659
Alignment:
| Q |
11 |
cacagagagaaggttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaa |
110 |
Q |
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| T |
35952419 |
cacagagagaaggttattccaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaa |
35952518 |
T |
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| Q |
111 |
atttcatggaaaggtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatt |
210 |
Q |
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| T |
35952519 |
atttcatggaaaggcatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatt |
35952618 |
T |
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| Q |
211 |
tttctttcattcataagaatcagaaacaactttggctaatc |
251 |
Q |
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| T |
35952619 |
tttctttcattcataagaatcagaaacaactttggctaatc |
35952659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 35972372 - 35972607
Alignment:
| Q |
11 |
cacagagagaaggttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaa |
110 |
Q |
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| T |
35972372 |
cacagagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaa |
35972471 |
T |
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| Q |
111 |
atttcatggaaaggtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatt |
210 |
Q |
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| T |
35972472 |
atttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcattcagtttttt |
35972571 |
T |
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| Q |
211 |
tttctttcattcataagaatcagaaacaactttggc |
246 |
Q |
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| T |
35972572 |
tttctttcattcataagaatcacaaacaactttggc |
35972607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 35979567 - 35979742
Alignment:
| Q |
56 |
ctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggtatctagatccaaaaaacaagcagatattga |
155 |
Q |
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| T |
35979567 |
ctggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatga |
35979666 |
T |
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| Q |
156 |
tgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattcataagaatc |
231 |
Q |
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| T |
35979667 |
tgctgcaaagattgcttacaaggccttaaaagatggtaagtttattcacttgattttgctttcatgcataagaatc |
35979742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 35956469 - 35956662
Alignment:
| Q |
14 |
agagagaaggttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatt |
113 |
Q |
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| T |
35956469 |
agagagaaggtttttccaaaccaacatataaaactacacaaattggtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatt |
35956568 |
T |
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| Q |
114 |
tcatggaaaggtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttg |
207 |
Q |
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| T |
35956569 |
tcatggaaaggcatctaaatccaaaaacaaggcagaagaagatgccgcaaagattgcttacatcaccttaaaagagtgtaagttcattcacttg |
35956662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35969408 - 35969617
Alignment:
| Q |
11 |
cacagagagaaggttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaa |
110 |
Q |
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|||||| | |||||| || |||||||||||||| ||||| | || ||||||| |||||||||| ||||| ||||||| |||| ||||||||||| || | |
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| T |
35969408 |
cacagaaaaaaggtttttccaaaccaacatataaaactacacagactggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtgga |
35969507 |
T |
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| Q |
111 |
atttcatggaaaggtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatt |
210 |
Q |
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| T |
35969508 |
gtttcatggaaatgcatctagatccaaaaaagaggcagaacgtgatgctgcaaagattgcttacaaggccataaaagatggtaaatttattcacttgatt |
35969607 |
T |
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| Q |
211 |
tttctttcat |
220 |
Q |
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| T |
35969608 |
taactttcat |
35969617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 35974470 - 35974544
Alignment:
| Q |
126 |
atctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcat |
200 |
Q |
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| T |
35974470 |
atctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagttcat |
35974544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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